Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq19980 145 6e-30
seq7231 141 7e-29
>seq19980
Length=299602
Score = 145 bits (160), Expect = 6e-30
Identities = 162/214 (76%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|||||||| |||||| || || |||||||||||||| || || | | |||||| |||
Sbjct 145176 CAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAGAGCGTGCGACCATC 145117
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
||||| |||||||| || | ||||| ||||| ||||| || ||||| || || |||||
Sbjct 145116 CTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGAATTCCTTCCTTGTC 145057
Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752
||| |||||| | ||| || | || | || || | || ||||||||||| || |
Sbjct 145056 TTG-AATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGACTTCAAGAGTGATCG 144998
Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||| || || | ||||||||||| ||||||||
Sbjct 144997 TTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964
Score = 122 bits (134), Expect = 7e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| || || | |||||| ||||| || ||||| || || || || | || || || |
Sbjct 144722 CGAAGTACAAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCTGAAAGAGTACGTCCA 144663
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || |||||||| || ||| | || | || |||||||| || || ||||||||||||
Sbjct 144662 TCTTCTAGTTGTTTACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGGATACCCTCTTTG 144603
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
||||| | ||| || ||| | || | ||||||||| |||| || || || || ||
Sbjct 144602 TCTTGGATTTTCGCCTTAACATTCTCAATTGTGTCAGAAGGTTCAACCTCCAGGGTGATG 144543
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||||| || || | || || ||||| ||||||||
Sbjct 144542 GTTTTCCCGGTGAGAGTCTTTACAAAGATCTGCAT 144508
>seq7231
Length=219762
Score = 141 bits (156), Expect = 7e-29
Identities = 161/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| ||||| | ||| || ||| ||| || |||||||||||||| || |||||| |
Sbjct 93228 CGAAGCACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGGGTGCGGCCA 93287
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || | ||||| |||||| | ||||| | |||||| || || ||||| |||||||||
Sbjct 93288 TCCTCCAACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCTTTG 93347
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | ||| ||||||| |||| | ||||| || | || |||||||| || ||
Sbjct 93348 TCCTGGATCTTTGCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTTCAAGCGTGATC 93407
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|| ||||| || | || || ||||| |||||||||
Sbjct 93408 GTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCATT 93443
Score = 136 bits (150), Expect = 3e-27
Identities = 160/214 (75%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634
|| || | ||| |||||||| |||||||| || || || |||| || || || ||
Sbjct 100679 AGTACAAGATGGAGCGTGGACTCTTTTTGGATATTGTAGTCCGAAAGAGTACGTCCGTCT 100738
Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694
|| | ||||| |||||| | || ||||| || || || || ||||||||||| ||||||
Sbjct 100739 TCCAACTGTTTTCCAGCAAAGATTAATCTCTGTTGGTCTGGGGGAATACCCTCCTTGTCT 100798
Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| ||| |||| |||||| |||| | || || ||| ||| || ||||| || |||||
Sbjct 100799 TG-AATCTTTGCCTTGACATTTTCGATTGTATCTGAAGATTCCACCTCAAGGGTGATAGT 100857
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|| || |||| |||||| || || |||||||||
Sbjct 100858 CTTACCGGTTAGGGTTTTCACGAAAATCTGCATT 100891
Score = 131 bits (144), Expect = 1e-25
Identities = 158/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| || || | ||| || ||||| |||||||| || || || || | || ||| |||
Sbjct 100448 CGAAGAACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTGAAAGGGTACGACCG 100507
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || |||||||| || ||| | ||||| || || ||||| || || ||||| ||||||
Sbjct 100508 TCTTCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCTTTG 100567
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
||||| | ||| ||| ||| | || | |||||||| | || ||||| || || |||
Sbjct 100568 TCTTGGATTTTCGCTTTAACATTCTCAATTGTGTCAGAGGGCTCAACTTCCAGGGTAATA 100627
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || | |||||| || || ||||||||
Sbjct 100628 GTCTTTCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662
Score = 127 bits (140), Expect = 2e-24
Identities = 169/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616
|||||||| | | ||||||||||| || || || |||||||| ||||| || |||||
Sbjct 92154 TGTCCTCCACGAAGGCGCAGCACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCG 92213
Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676
| | ||| || ||| ||||||||||| ||||| |||| | | |||||||| ||
Sbjct 92214 GACAGGGTACGTCCATCCTCGAGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGG 92273
Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTC 29735
|| || || || || || || |||||||| || || |||| | || || || | ||
Sbjct 92274 GGGATGCCTTCCTTATCCTG-AATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTC 92332
Query 29736 TACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|| ||||| ||||| ||||| || || || || ||||| || || ||||||
Sbjct 92333 AACCTCAAGGGTTATGGTTTTTCCGGTCAACGTCTTAACGAAAATTTGCATT 92384
Score = 125 bits (138), Expect = 6e-24
Identities = 160/218 (73%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| ||||| | ||| | ||| ||| || || ||||| || |||| | ||||||
Sbjct 92811 ACGGAGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACC 92870
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| ||||||||||| |||||| | || | | || || || |||||||| ||||||||
Sbjct 92871 GTCCTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTT 92930
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|||||| |||||| | ||| || | || | ||||| | || |||||||| ||||
Sbjct 92931 GTCTTG-AATTTTCGCTTTTACGTTCTCAATGGTGTCGCTTGGCTCAACTTCAAGTGTTA 92989
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
| ||||| || || | |||||| ||||| |||||||||
Sbjct 92990 TTGTTTTTCCCGTAAGGGTTTTCACAAAAATCTGCATT 93027
Score = 122 bits (134), Expect = 7e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|||| || | ||| || || || || |||||||| |||||||| | | ||| ||
Sbjct 93684 CGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGAGAGGGTACGGCCG 93743
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || ||||| ||||||||| | |||| | |||||||||||| || || ||||||||
Sbjct 93744 TCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGGATGCCCTCTTTA 93803
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | |||| || ||| |||| | || || |||| |||||||| || ||
Sbjct 93804 TCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAACTTCAAGGGTGATG 93863
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||||| ||||| | || || ||||| ||||||||
Sbjct 93864 GTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898
Score = 122 bits (134), Expect = 7e-23
Identities = 157/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634
||||||| |||||| || || ||||| ||||||||||| || | | || ||| |||
Sbjct 99995 AGCACCAGATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGATAGAGTACGACCATCT 100054
Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694
||||| ||||| |||||| | || | || || ||||| || || || || ||||||||
Sbjct 100055 TCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGAGGGATTCCTTCTTTGTCC 100114
Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| |||||| | ||||| |||| | || ||| |||||| || || || |||||
Sbjct 100115 TG-AATTTTGGCCTTGACGTTTTCAATGGTATCACTGGATTCTACCTCGAGTGTGATAGT 100173
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|||||| || | || || || || |||||||||
Sbjct 100174 TTTGCCTGTGAGCGTCTTCACGAAAATCTGCATT 100207
Score = 113 bits (124), Expect = 3e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| |||||||| ||||||||| ||| ||||||||||| || || | |||||| |
Sbjct 93456 CGAAGCACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTCACTGAGTGTGCGACCA 93515
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| ||||||||||| || || | || | | |||||| || || ||||||||||| |||
Sbjct 93516 TCCTCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTG 93575
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | ||| || || |||| | || || |||| || ||||| || |||
Sbjct 93576 TCCTGGATTTTGGCCTTCACGTTTTCAATTGTATCGCTGGGTTCAACCTCAAGTGTGATA 93635
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || | ||| || || || ||||||||
Sbjct 93636 GTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 93670
Score = 113 bits (124), Expect = 3e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
|||||| | | ||| || || | || || || || ||||| ||||||||||| || |
Sbjct 100207 TCCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGA 100266
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| || || || || || || ||||||||| | || || ||||||||||| |||||
Sbjct 100267 TAGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGCGG 100326
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737
|||||| || |||||||| ||| |||| || || |||| | || || | |||| |
Sbjct 100327 AATACCTTCCTTGTCTTG-AATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCAA 100385
Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || ||||| || || || || || | ||||| || || ||||||||
Sbjct 100386 CCTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385123199523168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |