Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq19980 145 6e-30 seq7231 141 7e-29 >seq19980 Length=299602 Score = 145 bits (160), Expect = 6e-30 Identities = 162/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 |||||||| |||||| || || |||||||||||||| || || | | |||||| ||| Sbjct 145176 CAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAGAGCGTGCGACCATC 145117 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 ||||| |||||||| || | ||||| ||||| ||||| || ||||| || || ||||| Sbjct 145116 CTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGAATTCCTTCCTTGTC 145057 Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 ||| |||||| | ||| || | || | || || | || ||||||||||| || | Sbjct 145056 TTG-AATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGACTTCAAGAGTGATCG 144998 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| || || | ||||||||||| |||||||| Sbjct 144997 TTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | |||||| ||||| || ||||| || || || || | || || || | Sbjct 144722 CGAAGTACAAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCTGAAAGAGTACGTCCA 144663 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || |||||||| || ||| | || | || |||||||| || || |||||||||||| Sbjct 144662 TCTTCTAGTTGTTTACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGGATACCCTCTTTG 144603 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||| || ||| | || | ||||||||| |||| || || || || || Sbjct 144602 TCTTGGATTTTCGCCTTAACATTCTCAATTGTGTCAGAAGGTTCAACCTCCAGGGTGATG 144543 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || | || || ||||| |||||||| Sbjct 144542 GTTTTCCCGGTGAGAGTCTTTACAAAGATCTGCAT 144508 >seq7231 Length=219762 Score = 141 bits (156), Expect = 7e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | ||| || ||| ||| || |||||||||||||| || |||||| | Sbjct 93228 CGAAGCACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGGGTGCGGCCA 93287 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | ||||| |||||| | ||||| | |||||| || || ||||| ||||||||| Sbjct 93288 TCCTCCAACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCTTTG 93347 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| ||||||| |||| | ||||| || | || |||||||| || || Sbjct 93348 TCCTGGATCTTTGCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTTCAAGCGTGATC 93407 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || ||||| || | || || ||||| ||||||||| Sbjct 93408 GTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCATT 93443 Score = 136 bits (150), Expect = 3e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || | ||| |||||||| |||||||| || || || |||| || || || || Sbjct 100679 AGTACAAGATGGAGCGTGGACTCTTTTTGGATATTGTAGTCCGAAAGAGTACGTCCGTCT 100738 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | ||||| |||||| | || ||||| || || || || ||||||||||| |||||| Sbjct 100739 TCCAACTGTTTTCCAGCAAAGATTAATCTCTGTTGGTCTGGGGGAATACCCTCCTTGTCT 100798 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| |||| |||||| |||| | || || ||| ||| || ||||| || ||||| Sbjct 100799 TG-AATCTTTGCCTTGACATTTTCGATTGTATCTGAAGATTCCACCTCAAGGGTGATAGT 100857 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || |||| |||||| || || ||||||||| Sbjct 100858 CTTACCGGTTAGGGTTTTCACGAAAATCTGCATT 100891 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | ||| || ||||| |||||||| || || || || | || ||| ||| Sbjct 100448 CGAAGAACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTGAAAGGGTACGACCG 100507 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || |||||||| || ||| | ||||| || || ||||| || || ||||| |||||| Sbjct 100508 TCTTCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCTTTG 100567 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||| ||| ||| | || | |||||||| | || ||||| || || ||| Sbjct 100568 TCTTGGATTTTCGCTTTAACATTCTCAATTGTGTCAGAGGGCTCAACTTCCAGGGTAATA 100627 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | |||||| || || |||||||| Sbjct 100628 GTCTTTCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662 Score = 127 bits (140), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616 |||||||| | | ||||||||||| || || || |||||||| ||||| || ||||| Sbjct 92154 TGTCCTCCACGAAGGCGCAGCACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCG 92213 Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676 | | ||| || ||| ||||||||||| ||||| |||| | | |||||||| || Sbjct 92214 GACAGGGTACGTCCATCCTCGAGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGG 92273 Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTC 29735 || || || || || || || |||||||| || || |||| | || || || | || Sbjct 92274 GGGATGCCTTCCTTATCCTG-AATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTC 92332 Query 29736 TACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || ||||| ||||| ||||| || || || || ||||| || || |||||| Sbjct 92333 AACCTCAAGGGTTATGGTTTTTCCGGTCAACGTCTTAACGAAAATTTGCATT 92384 Score = 125 bits (138), Expect = 6e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| | ||| | ||| ||| || || ||||| || |||| | |||||| Sbjct 92811 ACGGAGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACC 92870 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||||||||| |||||| | || | | || || || |||||||| |||||||| Sbjct 92871 GTCCTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTT 92930 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| |||||| | ||| || | || | ||||| | || |||||||| |||| Sbjct 92931 GTCTTG-AATTTTCGCTTTTACGTTCTCAATGGTGTCGCTTGGCTCAACTTCAAGTGTTA 92989 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | ||||| || || | |||||| ||||| ||||||||| Sbjct 92990 TTGTTTTTCCCGTAAGGGTTTTCACAAAAATCTGCATT 93027 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| || | ||| || || || || |||||||| |||||||| | | ||| || Sbjct 93684 CGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGAGAGGGTACGGCCG 93743 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || ||||| ||||||||| | |||| | |||||||||||| || || |||||||| Sbjct 93744 TCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGGATGCCCTCTTTA 93803 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | |||| || ||| |||| | || || |||| |||||||| || || Sbjct 93804 TCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAACTTCAAGGGTGATG 93863 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| | || || ||||| |||||||| Sbjct 93864 GTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898 Score = 122 bits (134), Expect = 7e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||||| |||||| || || ||||| ||||||||||| || | | || ||| ||| Sbjct 99995 AGCACCAGATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGATAGAGTACGACCATCT 100054 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 ||||| ||||| |||||| | || | || || ||||| || || || || |||||||| Sbjct 100055 TCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGAGGGATTCCTTCTTTGTCC 100114 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || |||||| | ||||| |||| | || ||| |||||| || || || ||||| Sbjct 100115 TG-AATTTTGGCCTTGACGTTTTCAATGGTATCACTGGATTCTACCTCGAGTGTGATAGT 100173 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||| || | || || || || ||||||||| Sbjct 100174 TTTGCCTGTGAGCGTCTTCACGAAAATCTGCATT 100207 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || |||||||| ||||||||| ||| ||||||||||| || || | |||||| | Sbjct 93456 CGAAGCACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTCACTGAGTGTGCGACCA 93515 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||||||||| || || | || | | |||||| || || ||||||||||| ||| Sbjct 93516 TCCTCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTG 93575 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| || || |||| | || || |||| || ||||| || ||| Sbjct 93576 TCCTGGATTTTGGCCTTCACGTTTTCAATTGTATCGCTGGGTTCAACCTCAAGTGTGATA 93635 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | ||| || || || |||||||| Sbjct 93636 GTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 93670 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||| || || | || || || || ||||| ||||||||||| || | Sbjct 100207 TCCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGA 100266 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || || || || || ||||||||| | || || ||||||||||| ||||| Sbjct 100267 TAGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGCGG 100326 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||||| || |||||||| ||| |||| || || |||| | || || | |||| | Sbjct 100327 AATACCTTCCTTGTCTTG-AATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCAA 100385 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| || || || || || | ||||| || || |||||||| Sbjct 100386 CCTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385123199523168