Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_023706.1 Length=75772 Score E Sequences producing significant alignments: (Bits) Value seq12436 107 9e-19 >seq12436 Length=461 Score = 107 bits (118), Expect = 9e-19 Identities = 232/343 (68%), Gaps = 18/343 (5%) Strand=Plus/Minus Query 4119 TGAACAAGATCAAGGACCTTGTTCCAGAGGAGTGCGAGGTCAAGTGGAAGTTCATCGACG 4178 |||| ||||| || ||||||||||| ||||||||| ||| | |||||| | |||| Sbjct 402 TGAAGAAGATGAAAGACCTTGTTCCGGAGGAGTGCTCGGTTCACTGGAAGAAGGTTGACG 343 Query 4179 GCGCTCCGATCCCGAGCGAGATTCCCGGAGCTGAGCCGCTGAAGCAGAAGGTTCCGATCT 4238 || || || ||| ||| || | |||| ||| |||| |||| Sbjct 342 GCTGGGCG---CC---------TCCGGGACACAAGA---TCAAGCCAAAGATTCCTATCT 298 Query 4239 TCGATGGAATCATGCAGCGCGG-CAAGCAT-ACCG-TTCCGGTGACGAACTCGTTCTGGT 4295 ||||||||||| | | || ||| | ||| |||| ||| ||| | ||||||| Sbjct 297 ACGATGGAATCAAGATTCTTGGTTCAGCTTGGCCGATTCCAGTGGATAACACCTTCTGGT 238 Query 4296 ACCCGCTGCTCATGCAGAACGGTGACTACAAGGGAACCAAGCTTCTGCGTGCGGCGTTCC 4355 | ||| |||| ||| |||| ||||||||| | || |||||||| || ||||||| | Sbjct 237 ATCCGATGCTGATGGAGAATGGTGACTACTACGGTCGGAAGCTTCTTCGGCCGGCGTTTC 178 Query 4356 AGTCGTGGTACTTCTCGAACCTGATCAAGCTGTTCGCGAACCAGTATTACGAGCGGTTCG 4415 |||| |||| |||| | || | | |||| || || | ||| |||||||| |||| Sbjct 177 AGTCTTGGTTCTTCAGCATTCTTCTTCACTTGTTTGCCAATCGGTACTACGAGCGATTCG 118 Query 4416 GTTCCCCGCTGCCGGTTGGTCGTGCGCCTTACGACGAAGAGAT 4458 || ||| | ||||| || || || || | ||||| ||||| Sbjct 117 GTGAGCCGGTTCCGGTAGGACGCGCTCCGTTTGACGACGAGAT 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242285205053024