Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq7231 197 3e-45 seq19980 163 6e-35 >seq7231 Length=219762 Score = 197 bits (218), Expect = 3e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | ||| || || | ||| |||||||| |||||||| || ||||| || ||| Sbjct 100208 CCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGAT 100267 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || ||| |||||||| || || || ||||||||||||| ||||| ||||| || || Sbjct 100268 AGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGCGGA 100327 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| |||||||||||||| || || ||||| || ||||| ||||||| || Sbjct 100328 ATACCTTCCTTGTCTTGAATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCAACC 100387 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| |||||||| || |||| ||| ||||| || |||||||| Sbjct 100388 TCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || ||||||||||| ||||||||||| ||||| ||||| || || | | || Sbjct 92169 CGCAGCACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGACAGGGTACGTCCA 92228 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || |||||||||||||| || || || | || ||||| || || || ||||||||| Sbjct 92229 TCCTCGAGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGGGATGCCTTCCTTA 92288 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || ||||| ||||| ||||| ||||| || ||||| || || || || | ||||| Sbjct 92289 TCCTGAATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAACCTCAAGGGTTATG 92348 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || ||||||||||| || || || |||||| Sbjct 92349 GTTTTTCCGGTCAACGTCTTAACGAAAATTTGCATT 92384 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 ||||| || || || || || ||||||||||| || || | | |||||||| ||||| Sbjct 93696 TGCAGTGTCGACTCCTTTTGAATATTATAATCTGAGAGGGTACGGCCGTCTTCCAGTTGC 93755 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || | ||| ||||| ||||| || || || ||||| || || ||| Sbjct 93756 TTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGGATGCCCTCTTTATCCTGGATTTTT 93815 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||||||||| ||||| | ||||| ||||| | || || || || || || Sbjct 93816 GCCTTCACATTTTCAATTGTATCGCTGGGTTCAACTTCAAGGGTGATGGTTTTTCCAGTG 93875 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | |||||| ||||| |||||||| Sbjct 93876 AGCGTCTTCACAAAGATCTGCAT 93898 Score = 149 bits (164), Expect = 1e-30 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || ||||| || ||||| || || || ||| | | |||||||| | ||| Sbjct 100688 TGGAGCGTGGACTCTTTTTGGATATTGTAGTCCGAAAGAGTACGTCCGTCTTCCAACTGT 100747 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 |||||||||||||||| ||| ||||| ||||| || || || ||||| |||||||||||| Sbjct 100748 TTTCCAGCAAAGATTAATCTCTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGAATCTTT 100807 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || |||||||| || ||||| || ||| || || | || || ||||| || || Sbjct 100808 GCCTTGACATTTTCGATTGTATCTGAAGATTCCACCTCAAGGGTGATAGTCTTACCGGTT 100867 Query 82788 AACGTCTTTACAAATATCTGCATTA 82812 | || || || || |||||||||| Sbjct 100868 AGGGTTTTCACGAAAATCTGCATTA 100892 Score = 147 bits (162), Expect = 4e-30 Identities = 167/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 82587 CCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGA 82646 |||| | ||| ||||| | ||| || || ||||||||||| || || || || || || Sbjct 92575 CCTCGGAGACGAAGAACGAGGTGGAGCGTTGATTCTTTCTGGATGTTGTAGTCTGACAGT 92634 Query 82647 ATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATT 82706 |||||||||| || || ||||| || |||||||| | || || || || || || || Sbjct 92635 GTTCTACCGTCCTCGAGCTGTTTACCCGCAAAGATCAATCGCTGCTGGTCAGGCGGGATA 92694 Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 |||||||| || ||||| || || || || || || || ||||| ||||| || ||| Sbjct 92695 CCTTCCTTGTCCTGAATTTTCGCCTTCACGTTCTCGATGGTATCTGAGGGTTCGACCTCC 92754 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || ||||| || ||||| |||||||| || || ||||| Sbjct 92755 AAGGTAATGGTCTTCCCCGTCAAAGTCTTTACGAAGATTTGCAT 92798 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | || ||||| | || || || || ||||| || ||||| || || | Sbjct 100434 TACCTCCACGAAGTCGAAGAACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTG 100493 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||||||| |||||||| || |||||||| | || ||||||||||||| Sbjct 100494 AAAGGGTACGACCGTCTTCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGAG 100553 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| || || ||||| ||||| ||||| || ||| || || | Sbjct 100554 GGATACCTTCTTTGTCTTGGATTTTCGCTTTAACATTCTCAATTGTGTCAGAGGGCTCAA 100613 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || || ||||| || || | || || || || |||||||| Sbjct 100614 CTTCCAGGGTAATAGTCTTTCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | |||||| || || | ||| ||||| ||||| ||||||||||| ||||| || Sbjct 93900 CCTCCGCGCAAACGGAGGACGAGGTGAAGAGTCGATTCCTTCTGTATATTGTAATCGGAG 93959 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||| ||||| || || ||||| || || || | || |||||||| || Sbjct 93960 AGTGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGTGGA 94019 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| ||||| || ||||||| || || || || ||||| || ||||| Sbjct 94020 ATACCTTCTTTATCCTGGATCTTTGTCTTGACGTTCTCGATCGTGTCCGATCCCTCTACG 94079 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || | ||| || || || || || || || || ||||| || |||||| || Sbjct 94080 TCTAGAGTGATAGTTTTCCCAGTTAATGTTTTCACAAAGATTTGCATTTTT 94130 Score = 132 bits (146), Expect = 9e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 82619 TTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAA 82678 ||| ||||| || || || || ||||| | | |||||| || ||||||||||||||||| Sbjct 92835 TTCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACCGTCCTCGAGTTGTTTTCCAGCAAA 92894 Query 82679 GATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATT 82738 ||| || | ||||| || || || || || || || |||||||| || |||||||| || Sbjct 92895 GATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACGTT 92954 Query 82739 TTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798 ||||| || || | || || ||||| | ||||| || || || || | || || || Sbjct 92955 CTCAATGGTGTCGCTTGGCTCAACTTCAAGTGTTATTGTTTTTCCCGTAAGGGTTTTCAC 93014 Query 82799 AAATATCTGCATT 82811 ||| ||||||||| Sbjct 93015 AAAAATCTGCATT 93027 Score = 122 bits (134), Expect = 2e-22 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 82587 CCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGA 82646 |||| || || || || | || ||||| ||| ||||| || |||||||| || Sbjct 93219 CCTCGCAGGCGAAGCACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGG 93278 Query 82647 ATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATT 82706 | | || || || | |||||||||||||| || | | ||| || || ||||| || Sbjct 93279 GTGCGGCCATCCTCCAACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATG 93338 Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 || || || || || ||||||||||| ||||||||||| || || || || ||||| Sbjct 93339 CCCTCTTTGTCCTGGATCTTTGCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTTCA 93398 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || ||||||||||| || | ||||| ||||| ||||||||| Sbjct 93399 AGCGTGATCGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCATT 93443 Score = 104 bits (114), Expect = 5e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || || ||| || || || || || ||| || | | ||| Sbjct 93456 CGAAGCACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTCACTGAGTGTGCGACCA 93515 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || ||||||||||| || || || || | ||| || || ||||| || || ||||| Sbjct 93516 TCCTCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTG 93575 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || || || || || || |||||||| ||||| | ||||| || || | || || Sbjct 93576 TCCTGGATTTTGGCCTTCACGTTTTCAATTGTATCGCTGGGTTCAACCTCAAGTGTGATA 93635 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | ||||| || || |||||||| Sbjct 93636 GTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 93670 >seq19980 Length=299602 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || ||||| || | || || || ||||||||||| || || ||||||| Sbjct 144508 TACCACCTCGCAGACGCAAGACAAGATGAAGGGTCGATTCTTTCTGGATGTTGTAATCAG 144449 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | |||||||| | ||||| ||||||||||||| || || || ||||| | Sbjct 144448 AAAGAGTACGTCCGTCTTCCAACTGTTTACCAGCAAAGATTAACCTCTGCTGGTCTGGGG 144389 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||||||||||||||| || || |||||||| || |||||| || || | Sbjct 144388 GAATCCCCTCCTTATCTTGAATCTTCGCCTTGACATTTTCGATTGTATCAGAAGACTCCA 144329 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || | || || ||||| || || || || || ||||| || |||||| Sbjct 144328 CCTCAAGGGTGATAGTCTTTCCGGTTAAAGTTTTCACAAAAATTTGCATT 144279 Score = 145 bits (160), Expect = 1e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || || || ||||| || || || || | | || Sbjct 144950 CGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATATTGTAGTCCGAAAGGGTGCGTCCA 144891 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || ||||| |||||||| | ||| |||||||| || || ||||||||||| Sbjct 144890 TCTTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTG 144831 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| || ||||| || ||||| |||||| ||| || |||||||| || || Sbjct 144830 TCTTGAATCTTGGCCTTTACGTTCTCAATTGTATCAGAAGGCTCCACTTCCAAGGTGATG 144771 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | || || || || || ||||| Sbjct 144770 GTCTTCCCAGTAAGGGTTTTGACGAAAATTTGCAT 144736 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||||| | | ||| || | || || ||||| ||||| || || || || || || Sbjct 145191 ACCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGA 145132 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | ||| || || || ||||| || || || || | ||||||||||| || || Sbjct 145131 GAGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGG 145072 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||||||||| |||||||| || ||||| || || ||||||||||| | || || || Sbjct 145071 AATTCCTTCCTTGTCTTGAATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGAC 145012 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| | ||| ||||| || || || | ||| || ||||| |||||||| Sbjct 145011 TTCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | || || || | || ||||| || || || || ||||| || || | Sbjct 144736 TACCTCCACGAAGTCGAAGTACAAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCTG 144677 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || |||||||||||||| || ||||||||||| || || ||||| || | Sbjct 144676 AAAGAGTACGTCCATCTTCTAGTTGTTTACCGGCAAAGATTAGCCTCTGCTGATCAGGGG 144617 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || || ||||| || || || || ||||| ||||| || ||| |||||| | Sbjct 144616 GGATACCCTCTTTGTCTTGGATTTTCGCCTTAACATTCTCAATTGTGTCAGAAGGTTCAA 144557 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || || || || || | ||||||||||| |||||||| Sbjct 144556 CCTCCAGGGTGATGGTTTTCCCGGTGAGAGTCTTTACAAAGATCTGCAT 144508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981569971091872