Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq19980 127 2e-24 seq7231 111 2e-19 seq19563 100 3e-16 >seq19980 Length=299602 Score = 127 bits (140), Expect = 2e-24 Identities = 155/206 (75%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| |||||||| || || ||||| ||| | |||| ||| | |||||||||| Sbjct 145167 ATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAGAGCGTGCGACCA-TCCTCGAGCT 145109 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| ||| |||| | || || || ||||| || || ||||||||||| ||| | Sbjct 145108 GTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGAATTCCTTCCTTGTC-TTGAATT 145050 Query 133576 TTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || |||| | | | ||||| ||| ||| | ||||| || || | |||| ||||| ||| Sbjct 145049 TTGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGACTTCAAGAGTGATCGTTTTTCCG 144990 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || ||||||||||| Sbjct 144989 GTAAGCGTTTTAACAAAAATCTGCAT 144964 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| || || |||||||| || | ||| | | | || || |||||||| | Sbjct 144933 GGTGGACTCCTTTTGAATATTGTAGTCCGAAAGGGTGCGTCCA-TCTTCAAGCTGCTTTC 144875 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | | ||| || ||||| || || ||||||||||| ||||| || Sbjct 144874 CGGCAAAGATCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTGTCTTGAATCTTGGCCT 144815 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| || || | |||||||| || | ||||| ||| || || || || | Sbjct 144814 TTACGTTCTCAATTGTATCAGAAGGCTCCACTTCCAAGGTGATGGTCTTCCCAGTAAGGG 144755 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| |||||||| ||||| Sbjct 144754 TTTTGACGAAAATTTGCAT 144736 >seq7231 Length=219762 Score = 111 bits (122), Expect = 2e-19 Identities = 147/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || |||||||| |||||||||||| || || | | | |||||||| || || || Sbjct 92187 GTTGATTCTTTCTGAATATTGTAATCGGACAGGGTACGTCCA-TCCTCGAGTTGTTTTCC 92245 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CT 133581 ||| | || || |||||||| || || |||||||||||||| || ||| ||||| || Sbjct 92246 AGCGAATATAAGACGCTGCTGATCAGGGGGGATGCCTTCCTTATC-CTGAATTTTTGCCT 92304 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | || || | |||||| || || | ||| | |||||| ||||||| | Sbjct 92305 TTACGTTTTCGATGGTATCCGAGGGCTCAACCTCAAGGGTTATGGTTTTTCCGGTCAACG 92364 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||| ||||| Sbjct 92365 TCTTAACGAAAATTTGCAT 92383 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || |||||||||||||||||| | ||| ||| |||||| ||||||||||| Sbjct 93930 GTCGATTCCTTCTGTATATTGTAATCGGAGAGTGTGCGAC-CGTCCTCTAGCTGCTTGCC 93988 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || |||||||| || || || || ||||| || || ||||||| ||| Sbjct 93989 AGCGAAAATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTATCCTGGATCTTTGTCTT 94048 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | |||||| | ||| ||||| | |||| ||||| || || | || Sbjct 94049 GACGTTCTCGATCGTGTCCGATCCCTCTACGTCTAGAGTGATAGTTTTCCCAGTTAATGT 94108 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || || || ||||| Sbjct 94109 TTTCACAAAGATTTGCAT 94126 Score = 100 bits (110), Expect = 3e-16 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514 ||| | |||||||||||| || |||||||| | | | | | |||| ||| || || Sbjct 100459 ATGGAGGGTGGACTCTTTTTGGATATTGTAGT--CTGAAAGGGTACGACCGTCTTCAAGT 100516 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || || | || | || ||| || || |||||||| ||||| ||||| ||| Sbjct 100517 TGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCTTTGTCTTGGAT- 100575 Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| |||| | | | ||||| ||||| | |||||| || || | ||| | || || || Sbjct 100576 TTTCGCTTTAACATTCTCAATTGTGTCAGAGGGCTCAACTTCCAGGGTAATAGTCTTTCC 100635 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || ||||| ||||| |||||||| Sbjct 100636 GGTAAGGGTTTTCACGAAGATCTGCAT 100662 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || || |||||||| || ||||| || || ||| | | |||||||||||| || | Sbjct 92602 GTTGATTCTTTCTGGATGTTGTAGTCTGACA--GTGTTCTACCGTCCTCGAGCTGTTTAC 92659 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-C 133580 |||| | || | ||||||||||| || ||||| ||||||||||| ||| ||| | | Sbjct 92660 CCGCAAAGATCAATCGCTGCTGGTCAGGCGGGATACCTTCCTTGTC-CTGAATTTTCGCC 92718 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | ||| | || || | ||| || || || | ||| | ||| || || |||| | Sbjct 92719 TTCACGTTCTCGATGGTATCTGAGGGTTCGACCTCCAAGGTAATGGTCTTCCCCGTCAAA 92778 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || |||||||| || ||||| Sbjct 92779 GTCTTTACGAAGATTTGCAT 92798 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGC 133521 || ||||||||||| || || || || || | | |||| || |||||||| || | Sbjct 100010 GTAGACTCTTTCTGAATGTTATAGTCAG--ATAGAGTACGACCATCTTCGAGCTGTTTAC 100067 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580 | || |||| |||| ||| || || |||||||| ||||| ||||| ||| ||| || Sbjct 100068 CAGCAAAAATTAGCCTCTGTTGATCAGGAGGGATTCCTTCTTTGTCC-TGAATTTTGGCC 100126 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | |||| || || ||| || || |||| |||| |||||||| || || Sbjct 100127 TTGACGTTTTCAATGGTATCACTGGATTCTACCTCGAGTGTGATAGTTTTGCCTGTGAGC 100186 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || |||||||||||||| Sbjct 100187 GTCTTCACGAAAATCTGCAT 100206 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCT 133515 |||| || ||||||||||| || || || || | ||| || || || || |||| Sbjct 100232 TGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGATAGCGTTCGGCCG--TCTTCAAGCT 100289 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || | || ||||| ||||| || || ||||||||||| |||| Sbjct 100290 GCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGCGGAATACCTTCCTTGTCTTGAATCT 100349 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||| | | || | || ||| | || || || || | |||| || || |||| Sbjct 100350 TTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCAACCTCTAGAGTGATCGTCTTTCCGG 100409 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||||||||||| |||||||| Sbjct 100410 TCAGCGTTTTTACGAAGATCTGCAT 100434 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||| || ||||| || ||||| || | |||| ||| ||||||||| | Sbjct 92823 ATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACC-GTCCTCGAGTT 92881 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | || || || | ||||| ||||| ||||| || || ||||| || ||||| ||| | Sbjct 92882 GTTTTCCAGCAAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTGTCT-TGAATT 92940 Query 133576 TTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || |||| | | ||||| |||||| | ||||| || || | || | ||||| || Sbjct 92941 TTCGCTTTTACGTTCTCAATGGTGTCGCTTGGCTCAACTTCAAGTGTTATTGTTTTTCCC 93000 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || ||||||||||| Sbjct 93001 GTAAGGGTTTTCACAAAAATCTGCAT 93026 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || || |||||||| || | || || || ||||| || ||||||||||| || || Sbjct 93743 GTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGGATGCCCTCTTT 93802 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| ||| ||| | | |||| || ||| |||| || || || | ||||| Sbjct 93803 ATCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAACTTCAAGGGTGAT 93862 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||| || || || || || || || |||||||| Sbjct 93863 GGTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898 >seq19563 Length=274849 Score = 100 bits (110), Expect = 3e-16 Identities = 470/735 (64%), Gaps = 20/735 (3%) Strand=Plus/Plus Query 148251 AGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTC 148310 |||| ||||| ||||| |||||||| || | | ||| || || ||| |||||||| Sbjct 230231 AGATGATGATTGACCACTTGAAACTCACCTGATAACACTCGACGTGAGTACGCGTTGCTC 230290 Query 148311 GTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATG 148370 ||| | ||||| | || || |||||||| | |||||| ||||||| ||| |||||||| Sbjct 230291 GTATATGGTTCTATGGATTCATTGTTGCCAAGAATCTGGGCGGTCGATGCAGTGGGCATA 230350 Query 148371 TACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGC-TTCAGAGCCGC 148429 || | || || ||||||| ||| |||| | | | || || || || || Sbjct 230351 GGTGCCAATAGGAGGCTATTGCGCACACC-ATATTTAGCAATCTTAGCTTTTAGCGCGGC 230409 Query 148430 CCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCC-GCGGC 148488 ||||||||| || | || || ||| |||||| || || |||| || || | Sbjct 230410 CCAGTCCCAAAGAGAACTGGGAGTGACGCCCCACATATCATATTGCAATATACCTTTAGA 230469 Query 148489 TAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCG 148548 || | || |||||||| | |||| || | | || ||| | || ||||| | Sbjct 230470 TA-CAGGCGAACCCTCGTAAGTTTCATACGTGCCTTCCACCTTCGCAATATCACAGCTTG 230528 Query 148549 CCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG---CAGCGCCGCCG 148605 | || | ||||||||||| || ||||| ||| | |||| || || || | | Sbjct 230529 CTTCCAAAGCGCCGTAGTAGATAGTCTCAAAGATTAGTTTGTTAAGTTCCATTGCTTCGG 230588 Query 148606 ACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCA 148665 || || |||| | ||||| | || | ||||||||| || || || || | Sbjct 230589 ---GACTGTCAAACGGTAAACGCAATATGATGAAAGTGTCGGCAAGCCCTTGGACTCCAA 230645 Query 148666 CGCCAATGGGCCGGT---GTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGTGG 148721 ||||| || || | ||||| || | | || | ||| || | ||||||| | Sbjct 230646 TTCCAATCGGTCGATGACGTTTATTGCT----ATGCTCTGCTTCTGGAACTGGATAGTAG 230701 Query 148722 TTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAA-TTCTGCGCAGCAA 148780 || ||||| ||||||| || || || ||| || || |||| ||| | || Sbjct 230702 TTAACATCGATAATCTTGTTGAGGTTTCGTGTCACAACTTTAGTAACCTCTTTG-AGTTT 230760 Query 148781 TTCAAAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCA 148840 | |||| || ||||| | || || | || || | |||| || || || ||||| Sbjct 230761 TCCAAAGTCAAACTTGCCTTCATTGACAAAGCGATTGAGTGCGAGTGACGCAAGGTTGCA 230820 Query 148841 CACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTT 148900 || || | ||||| || | | ||||| | || || | || | ||| ||| || Sbjct 230821 AACTGCGATTTCATCAGGAGAGGAATACTCGATTATTTCCGTACATAAATTAGAGCACTT 230880 Query 148901 GATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTA 148960 ||| || | || | ||||||||||| ||| || || || || || | ||||| Sbjct 230881 GATTGTTCCAAGATTTTGCTGATTGCTCTTTTGGTTACAAGCATCTTTATATAAGATGTA 230940 Query 148961 CGGTCCGCCAGTTTC 148975 ||| ||| ||||| Sbjct 230941 AGGTGTGCCTGTTTC 230955 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 149496 TTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATG 149555 |||||||| |||| |||||| || | || ||||| || |||||||| ||||| Sbjct 231707 TTCATGGTAAGCAAAAAGCAGGAACTCAGCTGCGGCCTACAGGTGCCGGCATTGAACAAC 231766 Query 149556 GTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGA--GCACGC 149613 || ||||||||||| || || | || | ||||||| | || | || | ||| || Sbjct 231767 GTCGGGCTGGCGTGCGTGAACCACTTTTCACTCATCAGATTATATGTTTCTATGGCA-GC 231825 Query 149614 GGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCT 149673 ||| |||||| ||| || || || | || || ||||| ||||| || || ||||||| Sbjct 231826 -GTCGATGTCAGTGCCGTGAATACCAACAGCTACACGCATGAGCATGTGTTGTGGTCGCT 231884 Query 149674 CCGCCACTTTGTTTCCAATTTTGAGCA 149700 | ||||||| ||||||| |||| Sbjct 231885 CAACCACTTTTCCATCAATTTTAAGCA 231911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483297237643520