Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq7231 125 5e-24 seq19980 123 2e-23 >seq7231 Length=219762 Score = 125 bits (138), Expect = 5e-24 Identities = 165/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 33525 ACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAG 33584 ||||| || || | ||| | ||| |||||||| || || || ||||| |||||| || Sbjct 93218 ACCTCGCAGGCGAAGCACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAG 93277 Query 33585 TGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCAC 33644 ||||| | || ||||| |||||||| |||||||||||||| ||||| || | || | Sbjct 93278 GGTGCGGCCATCCTCCAACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAAT 93337 Query 33645 ACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGT 33703 || |||||||| || || || || |||| || | |||||| || || || | Sbjct 93338 GCCCTCTTTGTCCTGGATCTT-TGCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTT 93396 Query 33704 CAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| ||||||||| || || || | || || |||||||||||||| Sbjct 93397 CAAGCGTGATCGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 93442 Score = 118 bits (130), Expect = 7e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||| | ||| | ||||| || || || |||||||| || || || ||||| | Sbjct 92811 ACGGAGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACC 92870 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| || | ||||||||| ||||| || | |||||| || || |||| | || ||||| Sbjct 92871 GTCCTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTT 92930 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||||||| ||| | | | ||| ||||||||||| || || |||| || | Sbjct 92931 GTCTTGAATTTTCGCTTTTA-CGTTCTCAATGGTGTCGCTTGGCTCAACTTCAAGTGTTA 92989 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||||| || || | ||||| ||||| |||||||| Sbjct 92990 TTGTTTTTCCCGTAAGGGTTTTCACAAAAATCTGCAT 93026 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | |||||| | || | || ||||| || || ||||| |||||||||||| Sbjct 93900 CCTCCGCGCAAACGGAGGACGAGGTGAAGAGTCGATTCCTTCTGTATATTGTAATCGGAG 93959 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| |||| || | || || || || ||||||| ||||||||||||| | || Sbjct 93960 AGTGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGTGGA 94019 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||| || || || ||| | || | || | ||||| | || || Sbjct 94020 ATACCTTCTTTATCCTGGATCTT-TGTCTTGACGTTCTCGATCGTGTCCGATCCCTCTAC 94078 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| | ||||| ||||| || ||||| ||||| |||||||| ||||| Sbjct 94079 GTCTAGAGTGATAGTTTTCCCAGTTAATGTTTTCACAAAGATTTGCAT 94126 Score = 105 bits (116), Expect = 4e-18 Identities = 170/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || |||| | ||||| || | |||||||| |||||| || ||| Sbjct 100196 AAAATCTGCATTCCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATG 100255 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 || || || || || || || |||| || | || || || ||||| || || | ||| Sbjct 100256 TTATAGTCTGATAGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGC 100315 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 ||||| |||| | |||||| ||||| ||| || || | ||| | || | || || Sbjct 100316 TGATCGGGCGGAATACCTTCCTTGTCTTGAATCTT-TGCCTTAACGTTTTCGATTGTATC 100374 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| | ||| || || | |||||||| || || || | ||||||||| ||||||||||| Sbjct 100375 GCTAGGTTCAACCTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434 Query 33750 A 33750 | Sbjct 100435 A 100435 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||||| || ||||| |||||||| || ||||||||| | || || Sbjct 93461 CACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTCACTGAGTGTGCGACCATCCTC 93520 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | |||||||||||| ||||| | ||| ||||| || | || | ||| || ||||| Sbjct 93521 GAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTGTCCTG 93580 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||||| ||| || | || | || ||||| | ||| || |||| ||||| || | Sbjct 93581 GATTTTGGCCTTC-ACGTTTTCAATTGTATCGCTGGGTTCAACCTCAAGTGTGATAGTCT 93639 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 93640 TCCCCGTGAGGGTCTTGACGAAGATCTGCAT 93670 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || || || | ||| || || ||| ||||| || || ||||| ||||| || || || Sbjct 93684 CGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGAGAGGGTACGGCCG 93743 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || |||| ||| || || ||||| |||| ||| |||||||| | || | || ||||| Sbjct 93744 TCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGGATGCCCTCTTTA 93803 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || ||||| |||| ||| ||| || ||||| | ||| || |||| ||||| Sbjct 93804 TCCTGGATTTTTGCCTTCA-CATTTTCAATTGTATCGCTGGGTTCAACTTCAAGGGTGAT 93862 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| || || | ||| || |||||||||||||| Sbjct 93863 GGTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| || ||| ||||||||| || ||||| || || || || || |||| || | ||| Sbjct 100459 ATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTGAAAGGGTACGACCGTCTTCAAGTTG 100518 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 ||| |||||||| ||||| | ||| |||||| | || | |||||||||||| ||||| Sbjct 100519 TTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCTTTGTCTTGGATTTT 100578 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 | | || ||||| || | ||||| | || || || | || || || || || | Sbjct 100579 C-GCTTTAACATTCTCAATTGTGTCAGAGGGCTCAACTTCCAGGGTAATAGTCTTTCCGG 100637 Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750 | | ||||| || |||||||||||| Sbjct 100638 TAAGGGTTTTCACGAAGATCTGCATA 100663 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| ||| ||||| |||||| || ||||| || || || || || || | || || Sbjct 99997 CACCAGATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGATAGAGTACGACCATCTTC 100056 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | ||||| || |||||||| | | ||| ||||| | || | ||||||||||| Sbjct 100057 GAGCTGTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGAGGGATTCCTTCTTTGTCCTG 100116 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 |||||| | | || | || | ||| || || ||||| || || | ||||| |||| Sbjct 100117 AATTTT-GGCCTTGACGTTTTCAATGGTATCACTGGATTCTACCTCGAGTGTGATAGTTT 100175 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||||| | ||| || || || |||||||| Sbjct 100176 TGCCTGTGAGCGTCTTCACGAAAATCTGCAT 100206 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || ||||| ||||| || || ||||||||||| || || ||| | || || Sbjct 92174 CACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGACAGGGTACGTCCATCCTC 92233 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | ||||||||| || || || | |||||||||||| | || | ||||| || || Sbjct 92234 GAGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGGGATGCCTTCCTTATCCTG 92293 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 |||||| || | || | || | ||| || | || || |||| || || |||| Sbjct 92294 AATTTT-TGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAACCTCAAGGGTTATGGTTT 92352 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || ||||| || || || || ||||| Sbjct 92353 TTCCGGTCAACGTCTTAACGAAAATTTGCAT 92383 >seq19980 Length=299602 Score = 123 bits (136), Expect = 2e-23 Identities = 170/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 33517 TCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAA 33576 || ||||| |||| | | | ||||| ||| || || ||||||||| |||||||| Sbjct 145196 TCATCACCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAG 145137 Query 33577 TCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCT 33636 |||||||| ||||| | || || | ||||| || || |||||||| | || ||||| Sbjct 145136 TCGGAGAGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCG 145077 Query 33637 TGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGA 33695 | || | ||||| ||||| |||||| ||| ||| | ||| || ||||||| Sbjct 145076 GGGGGAATTCCTTCCTTGTCTTGAATTTTGGCTTT-AACGTTCTCAATCGTATCGCTTGG 145018 Query 33696 TTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || |||| ||||||||||| || || | |||||| ||||| ||||||||| Sbjct 145017 CTCGACTTCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCATA 144963 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| || ||| || || | ||| || || ||||| || ||||||||||| || Sbjct 144507 ACCACCTCGCAGACGCAAGACAAGATGAAGGGTCGATTCTTTCTGGATGTTGTAATCAGA 144448 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| |||| ||||| ||||| || ||||| || || | |||||| ||| | || Sbjct 144447 AAGAGTACGTCCGTCTTCCAACTGTTTACCAGCAAAGATTAACCTCTGCTGGTCTGGGGG 144388 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || ||| ||| | | |||| || | || || || |||| Sbjct 144387 AATCCCCTCCTTATCTTGAATCTTC-GCCTTGACATTTTCGATTGTATCAGAAGACTCCA 144329 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || ||||| ||||| ||||| || ||||| Sbjct 144328 CCTCAAGGGTGATAGTCTTTCCGGTTAAAGTTTTCACAAAAATTTGCAT 144280 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| |||||| ||| ||||| || ||||| || || || || ||| | || || | ||| Sbjct 144711 ATGAAGAGTGGACTCCTTTTGGATATTGTAGTCTGAAAGAGTACGTCCATCTTCTAGTTG 144652 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 ||| |||||||| || | | ||||||||| | || | ||| |||||||| ||||| Sbjct 144651 TTTACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGGATACCCTCTTTGTCTTGGATTTT 144592 Query 33666 CTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 | || ||||| ||| ||||| | ||| || || | ||||| ||||| || | Sbjct 144591 CGCCTT-AACATTCTCAATTGTGTCAGAAGGTTCAACCTCCAGGGTGATGGTTTTCCCGG 144533 Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750 | | || |||||||||||||||||| Sbjct 144532 TGAGAGTCTTTACAAAGATCTGCATA 144507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328622083676160