Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq19980 122 2e-22 seq7231 120 7e-22 >seq19980 Length=299602 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || || || || || ||||| ||||||||||| |||||| ||| | || Sbjct 144750 CAAAACCCTTACTGGGAAGACCATCACCTTGGAAGTGGAGCCTTCTGATACAATTGAGAA 144809 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 |||||| ||||||||||| || ||||||||| || || || ||| | ||||| Sbjct 144810 CGTAAAGGCCAAGATTCAAGACAAGGAAGGAATTCCCCCCGATCAACAGAGATTGATCTT 144869 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||||||||| | ||||||||| | || | | || ||||| | || || ||||| Sbjct 144870 TGCCGGAAAGCAGCTTGAAGATGGACGCACCCTTTCGGACTACAATATTCAAAAGGAGTC 144929 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || || |||||||| | ||||||| Sbjct 144930 CACCCTCCACCTTGTCCTTCGACTTCG 144956 Score = 116 bits (128), Expect = 9e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || ||||| || ||||| | || ||||| |||||| ||| ||||| Sbjct 144295 AAAACTTTAACCGGAAAGACTATCACCCTTGAGGTGGAGTCTTCTGATACAATCGAAAAT 144354 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| || || || ||| || ||| || || | ||||| Sbjct 144355 GTCAAGGCGAAGATTCAAGATAAGGAGGGGATTCCCCCAGACCAGCAGAGGTTAATCTTT 144414 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||||||||||| ||| | ||| | | ||||||||| |||||||||| || Sbjct 144415 GCTGGTAAACAGTTGGAAGACGGACGTACTCTTTCTGATTACAACATCCAGAAAGAATCG 144474 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || ||||| ||||| ||| | || ||| Sbjct 144475 ACCCTTCATCTTGTCTTGCGTCTGCGA 144501 Score = 107 bits (118), Expect = 5e-18 Identities = 160/223 (72%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||| ||| |||||||| || ||||||||||||||| | ||||| || ||| Sbjct 144967 CAGATTTTTGTTAAAACGCTTACCGGAAAAACGATCACTCTTGAAGTCGAGCCAAGC--- 145023 Query 206230 GACACAGTCGA-ATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGC 206288 || || | || | | |||||| ||| |||||||| || ||||||||| || || Sbjct 145024 GATACGATTGAGAACGTTAAAGCCAAA-ATTCAAGACAAGGAAGGAATTCCCCCCGATCA 145082 Query 206289 TCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 ||||| | || ||||| || || ||| | || ||||| | || | |||| ||||| Sbjct 145083 ACAAAGGTTGATTTTCGCAGGCAAACAGCTCGAGGATGGTCGCACGCTCTCCGACTACAA 145142 Query 206349 CGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 | | || ||||||||||| ||||| || || ||||||| ||| Sbjct 145143 CATTCAAAAAGAGTCTACCCTTCATCTGGTGCTGAGACTCCGA 145185 >seq7231 Length=219762 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| | || |||||| ||| || ||| ||||| Sbjct 100875 AAAACCCTAACCGGTAAGACTATCACCCTTGAGGTGGAATCTTCAGATACAATCGAAAAT 100816 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||||||| || || || ||| || ||| || ||| | ||||| Sbjct 100815 GTCAAGGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAACAGAGATTAATCTTT 100756 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||| ||||||||||| ||| | ||| | | || ||||| |||| |||||||| Sbjct 100755 GCTGGAAAACAGTTGGAAGACGGACGTACTCTTTCGGACTACAATATCCAAAAAGAGTCC 100696 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || ||||| | |||||||| Sbjct 100695 ACGCTCCATCTTGTACTTAGACTTCG 100670 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||||| || ||||| ||||||||| | || || ||| | || ||| ||||| Sbjct 100419 AAAACGCTGACCGGAAAGACGATCACTCTAGAGGTTGAACCTAGCGATACAATCGAAAAC 100360 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||||||| || ||||| ||| ||| || ||||| | ||||| Sbjct 100359 GTTAAGGCAAAGATTCAAGACAAGGAAGGTATTCCGCCCGATCAGCAAAGGTTAATCTTT 100300 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | ||||| || | || | | || || ||| | |||||||||||| Sbjct 100299 GCTGGCAAGCAGCTTGAAGACGGCCGAACGCTATCAGACTATAACATTCAGAAAGAGTCT 100240 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| ||||| || | | |||||| Sbjct 100239 ACTCTACACCTCGTACTACGTCTTCGA 100213 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||||||||| ||||| ||||| | || || ||| ||| || | ||| Sbjct 100191 AAGACGCTCACAGGCAAAACTATCACACTCGAGGTAGAATCCAGTGATACCATTGAAAAC 100132 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || ||||| || ||||||||||| || || || || || || || Sbjct 100131 GTCAAGGCCAAAATTCAGGACAAAGAAGGAATCCCTCCTGATCAACAGAGGCTAATTTTT 100072 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| | |||||||| | ||| | | || || ||| | |||||||||||| Sbjct 100071 GCTGGTAAACAGCTCGAAGATGGTCGTACTCTATCTGACTATAACATTCAGAAAGAGTCT 100012 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| || || | ||||| || Sbjct 100011 ACTCTTCATCTGGTGCTCAGACTCCG 99986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181511174768608