Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq19464 140 3e-28 seq19563 134 1e-26 seq7231 107 2e-18 seq19980 102 8e-17 >seq19464 Length=44290 Score = 140 bits (154), Expect = 3e-28 Identities = 350/517 (68%), Gaps = 15/517 (3%) Strand=Plus/Minus Query 46759 TGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCA 46818 |||||||| || || ||||| | |||||| | ||||||||| | |||| || Sbjct 12548 TGCCATGCATTAAGAAGAAGGCTGATTGGGCCTTAGAGTGGATCGCTAACGAGGAGGCTG 12489 Query 46819 CGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGttttt-ttCGGGCAGT 46877 || | ||||| | ||||||||||| |||||||||| | ||||| |||| | Sbjct 12488 CGTACGGTGAGCGTGTTGTGGCATTCGCTGCAGTCGAAGGCATTTTTTTCAGCGGGGCG- 12430 Query 46878 TTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAAC 46937 |||||||| ||||| | | |||| ||| || ||||| ||||| || ||||| || Sbjct 12429 TTTGCCGCTATTTTCTGGCTGAAAAAGCGAGGTATCATGCCTGGCCTCACCTTCAGCAAT 12370 Query 46938 GAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACG 46997 ||| | ||||| || |||||||| | ||||| ||||| || ||||| | ||| Sbjct 12369 GAGCTCATCTCACGTGACGAAGGTATGCACACAGACTTCGCCTGTCTGATGTTCAA---A 12313 Query 46998 CGCGTGAATGAGAAATTAAACTCGGACACGATCCTGAGC--ATGTTTAGGGAGGCGGTGA 47055 | | ||| | ||| || | | | ||| || | | || ||| ||| || || Sbjct 12312 CACCTGATCAACAAACCAAGCGAAG-CGCGAATCT-ATCAAATCATTAAGGACGCTGTTG 12255 Query 47056 GCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCAC 47115 ||||||| | || ||| | |||| || | || ||||| || |||| |||||| | Sbjct 12254 CCATCGAACAAGAATTTCTCACTGAAGCATTACCTGTCGCTATGTTGGGTATGAAC-TGC 12196 Query 47116 AGTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAA 47174 ||| ||| ||| |||||||| || || ||||||||| | | ||||| || Sbjct 12195 GATCTGATGAAGAGATACATTGAGTTCGTTGCTGATCGTCTGCTCATCGAGCTC-AACTG 12137 Query 47175 CC-GAA-ATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGG 47232 || ||| ||| | | | || |||||||| || |||||| | | ||||| ||||| | Sbjct 12136 CCAGAAGCTATGGAAGTCCACG-AATCCGTTCGACTTTATGGAGCAAATTTCCCTCGAAG 12078 Query 47233 GCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 ||||||| ||||| || || ||||| || || || || Sbjct 12077 GCAAAACGAATTTCTTTGAAAAACGCGTTGGTGAATA 12041 >seq19563 Length=274849 Score = 134 bits (148), Expect = 1e-26 Identities = 726/1153 (63%), Gaps = 23/1153 (2%) Strand=Plus/Plus Query 146872 AGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTC-TGAG 146930 || || | || || || |||||||||||||||||||| || | | ||| || | |||| Sbjct 230219 AGATCTTTAAGTAGATGATGATTGACCACTTGAAACTCACCTGATAACACTCGACGTGAG 230278 Query 146931 ATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGT 146990 ||| | ||||| || | || || | || ||||| ||||| | || ||||| || | Sbjct 230279 -TACGCGTTGCTCGTATATGGTTCTATGGATTCATTGTTGCCAAGAATCTGGGCGGTCGA 230337 Query 146991 TGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTC 147050 ||| || ||||| |||| | | ||| |||| ||| || | || || | Sbjct 230338 TGCAGTGGGCATAGGTGCCAATAGGAGGCTATTGCGCACACCATATTTAGCAATCTTAGC 230397 Query 147051 CTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAG 147110 || | | ||||||||| | || ||| || ||| |||||| || || || | Sbjct 230398 TTTTAGCGCGGCCCAGTCCCAAAGAGAACTGGGAGTGACGCCCCACATATCATATTGCAA 230457 Query 147111 CACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAA 147170 | ||| | | || || || | || || | || || || ||| | Sbjct 230458 TATACCTTTAGATACAGGCGAACCCTCGTAAGTTTCATACGTGCCTTCCACCTTCGCAAT 230517 Query 147171 TTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGAC 147230 ||||||||||| || | || || ||||| || || || |||| ||||||| || | Sbjct 230518 ATCACAGCTTGCTTCCAAAGCGCCGTAGTAGATAGTCTCAAAGATTAGTTTGTTAAGTTC 230577 Query 147231 GGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTG 147290 | ||||| || || | || | ||||| | | || | ||||| | || || Sbjct 230578 CATTGCTTCGGGACTGTCAAACGGTAAACGCAATATGATGAAAGTGTCGGCAAGCCCTTG 230637 Query 147291 GATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATA 147350 || || | || || |||||||| || ||||| ||| || | | ||||| Sbjct 230638 GACTCCAATTCCAATCGGTCGATGACGTTTATTGCTATGCTCTGCTTCTGGAACTGGATA 230697 Query 147351 GTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAG 147410 || ||| ||| ||||||||||||||||| || ||||||||||| | |||||| Sbjct 230698 GTAGTTAACATCGATAATCTTGTTGAGGTTTCGTGTCACAACTTTAGTAACCTCTTTGAG 230757 Query 147411 TTTCTCGAAATCATAAGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGC 147470 ||| | || ||| | | || || | |||| | || | || | |||| ||||| Sbjct 230758 TTTTCCAAAGTCAAACTTGCCTTCATTGACA---AAGC---GATTGAGTGCGAGTGACGC 230811 Query 147471 CAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTT 147530 || ||||| || || | || || | | |||| | ||||| | || | || Sbjct 230812 AAGGTTGCAAACTGCGATTTCATCAGGAGAGGAATACTCGATTATTTCCGTACATAAATT 230871 Query 147531 GCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAA 147590 ||| || || ||| | ||||||||||||||| || | || || || ||||| | Sbjct 230872 AGAGCACTTGATTGTTCCAAGATTTTGCTGATTGCTCTTTTGGTTACAAGCATCTTTATA 230931 Query 147591 GAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTC 147647 | ||||| ||| ||| || || | ||| |||| | || | ||| | || | Sbjct 230932 TAAGATGTAAGGTGTGCCTGTTTCAATTTGACTTTCGAGAATGGCATACCAA---AGTTT 230988 Query 147648 CTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTC 147707 ||| ||| ||| | || ||||||||||| ||| || ||||||| | || Sbjct 230989 CTGGGCTTCTACCTGGCGCATGAAGCGGCCCTCGCGTTCATATTGCTCGTAGAGTTTTTC 231048 Query 147708 AAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCA 147767 ||||| | || | || ||| || || ||||| |||| | ||||||| ||||| Sbjct 231049 GAACTCCTTTCCCCAACAGTCGCTCAGCCCCGGACATTGATTGGAGCACATCAAAGACCA 231108 Query 147768 CATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAG 147827 | | | | | | || || ||||||||||| || || ||||| || | || | ||| Sbjct 231109 CTGGCCATTTTCCTCGACTCGACGCATAAACAGGTCAGGTACCCAAAGGCCATAGAAAAG 231168 Query 147828 ATCGCGCGCTTTGCAATCCTCGGCGCC---CATGTTGCGTTTCAAATTAAGCACGCTATA 147884 ||| || ||| || || || || | ||||| ||||| || | | | Sbjct 231169 ATCACGAGCTCTGTGTTCTTCAATACCAGTATTCTTGCG---CAAATCGAGGAATTCAAA 231225 Query 147885 GATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCC 147941 ||| ||||| ||||| ||||| | |||| || | ||||| | | || || || Sbjct 231226 GATATCGGCATGCCATGGTTCCAAATAGATCGCAAAAGCACCCGGCCTCTTATTACCTCC 231285 Query 147942 CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGC 148001 |||||| |||| ||| | |||| || |||| || | ||| || | | ||| ||| Sbjct 231286 CTGGTCAACATATCGCGCTGTGTTATTGTACACACGAAGCATTGGCACAATGCCATTCGA 231345 Query 148002 AGTGCCGTTGGTG 148014 || ||||| ||| Sbjct 231346 TGTTCCGTTAGTG 231358 Score = 98.7 bits (108), Expect = 9e-16 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 148143 AAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACT 148202 ||||||||| || |||| || ||||| | | || || || ||| | || || || Sbjct 231715 AAGCAAAAAGCAGGAACTCAGCTGCGGCCTACAGGTGCCGGCATTGAACAACGTCGGGCT 231774 Query 148203 CGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTC 148262 |||||||| ||| | |||| |||||||| ||| || || || || | |||||||| Sbjct 231775 GGCGTGCGTGAACCACTTTTCACTCATCAGATTATATGTTTCTATGGCAGCGTCGATGTC 231834 Query 148263 GTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTT 148321 ||||||||| || | || || |||||||||||||| |||||||| || | |||| Sbjct 231835 AGTGCCGTGAATACCAACAGCTACACGCATGAGCATGTGTTGTGGTCGCTCAACCACTT 231893 >seq7231 Length=219762 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| |||||||| ||||| | ||||| |||||||||||||||||| | | Sbjct 100013 GACTCTTTCTGAATGTTATAGTCAGATAGAGTACGACCATCTTCGAGCTGTTTACCAGCA 100072 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | ||||| | ||||||||| ||||| || |||||||| || |||||| || | Sbjct 100073 AAAATTAGCCTCTGTTGATCAGGAGGGATTCCTTCTTTGTCCTGAATTTTGGCCTTGACG 100132 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | | || || |||| || | ||||| || || || || || Sbjct 100133 TTTTCAATGGTATCACTGGATTCTACCTCGAGTGTGATAGTTTTGCCTGTGAGCGTCTTC 100192 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 100193 ACGAAAATCTGCAT 100206 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| | ||| | | | ||||||||||| || |||||||| | |||||| ||||| Sbjct 100453 AACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTGAAAGGGTACGACCGTCTTC 100512 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || |||||||||| | |||| | | ||||||||||||||| || |||||||| || Sbjct 100513 AAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCTTTGTCTTG 100572 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||| ||| | | || | || || | ||||| ||||| | || | || || Sbjct 100573 GATTTTCGCTTTAACATTCTCAATTGTGTCAGAGGGCTCAACTTCCAGGGTAATAGTCTT 100632 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| | ||| |||||||| Sbjct 100633 TCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 131933 TCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAG 131992 || || || ||||||||||| | || || || ||||| ||||| || | | || Sbjct 92836 TCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACCGTCCTCGAGTTGTTTTCCAGCAAAG 92895 Query 131993 ATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGT 132052 || ||||||||||| || || || ||||| ||||| || |||||| ||| | | Sbjct 92896 ATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACGTTC 92955 Query 132053 TCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATG 132112 || | || ||| | ||||| ||||| | || | ||||| || || || ||||| | Sbjct 92956 TCAATGGTGTCGCTTGGCTCAACTTCAAGTGTTATTGTTTTTCCCGTAAGGGTTTTCACA 93015 Query 132113 AAAATCTGCAT 132123 ||||||||||| Sbjct 93016 AAAATCTGCAT 93026 >seq19980 Length=299602 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||| ||| | | | |||||||||||||||||||||||| | || || ||| ||| Sbjct 145172 ACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAGAGCGTGCGACCATCCTCG 145113 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 |||||||| || | | || | | |||||||| || || || ||||| || || | Sbjct 145112 AGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGAATTCCTTCCTTGTCTTGA 145053 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | || | |||||| | ||||| ||||| | || | |||||| Sbjct 145052 ATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGACTTCAAGAGTGATCGTTTTT 144993 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| | ||||||||||| Sbjct 144992 CCGGTAAGCGTTTTAACAAAAATCTGCAT 144964 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||| |||||||| | ||| || |||||| ||||| || |||| | Sbjct 144929 GACTCCTTTTGAATATTGTAGTCCGAAAGGGTGCGTCCATCTTCAAGCTGCTTTCCGGCA 144870 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||||||||| || || || ||||| || || ||| || || | Sbjct 144869 AAGATCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTGTCTTGAATCTTGGCCTTTACG 144810 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | ||||||||||| | || | || || ||||| || ||||| Sbjct 144809 TTCTCAATTGTATCAGAAGGCTCCACTTCCAAGGTGATGGTCTTCCCAGTAAGGGTTTTG 144750 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 144749 ACGAAAATTTGCAT 144736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476489378177280