Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq18952 104 7e-19
seq2794 100 9e-18
seq19293 98.7 3e-17
seq18132 98.7 3e-17
seq17726 98.7 3e-17
>seq18952
Length=94268
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 49978 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 49919
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 49918 CCGGGTTTCGGC 49907
>seq2794
Length=56750
Score = 100 bits (110), Expect = 9e-18
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 56498 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 56439
Query 2828 CCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 56438 CCCGGGTTTCGGC 56426
>seq19293
Length=85019
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 6234 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 6293
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 6294 CCGGGTTTCGGC 6305
>seq18132
Length=44295
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 30104 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 30045
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 30044 CCGGGTTTCGGC 30033
>seq17726
Length=138386
Score = 98.7 bits (108), Expect = 3e-17
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||| |
Sbjct 115425 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCGA 115484
Query 2827 CCCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 115485 TCCCGGGTTTCGGC 115498
Score = 95.1 bits (104), Expect = 4e-16
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||| ||||||||||| | |
Sbjct 94548 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAAGTCCCTGGTTCGATC 94607
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 94608 CCGGGTTTCGGC 94619
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15846055236960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |