Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq19980 138 1e-27
seq7231 98.7 9e-16
>seq19980
Length=299602
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA- 25233
||||| | ||||| ||||| | ||||||||| ||||||| | |||||||| |||||
Sbjct 144964 ATGCAGATTTTTGTTAAAACGCTTACCGGAAAAACGATCACTCTTGAAGTCGA-GCCAAG 145022
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
|||||| || ||| | || ||| |||||| || || || || || || ||||||||
Sbjct 145023 CGATACGATTGAGAACGTTAAAGCCAAAATTCAAGACAAGGAAGGAATTCCCCCCGATCA 145082
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
||||| | |||| || |||||||| ||||| |||| | | | || ||| |||||
Sbjct 145083 ACAAAGGTTGATTTTCGCAGGCAAACAGCTCGAGGATGGTCGCACGCTCTCCGACTACAA 145142
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401
||||||||||| || ||| ||||| | ||| | ||| | |||||||
Sbjct 145143 CATTCAAAAAGAGTCTACCCTTCATCTGGTGCTGAGACTCCGAGGAGG 145190
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | |||||||| || | ||||| ||| | ||||| | || || ||| |
Sbjct 144508 ATGCAGATCTTTGTAAAGACTCTCACCGGGAAAACCATCACCCTGGAGGTTGAACCTTCT 144567
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || || ||| | || || ||||| || ||||||||||| || || ||||||
Sbjct 144568 GACACAATTGAGAATGTTAAGGCGAAAATCCAAGACAAAGAGGGTATCCCCCCTGATCAG 144627
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| || || || | | ||| |||||||| ||||||| | | | | || ||||||
Sbjct 144628 CAGAGGCTAATCTTTGCCGGTAAACAACTAGAAGATGGACGTACTCTTTCAGACTACAAT 144687
Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378
|| ||||| || ||||| |||||
Sbjct 144688 ATCCAAAAGGAGTCCACTCTTCAT 144711
>seq7231
Length=219762
Score = 98.7 bits (108), Expect = 9e-16
Identities = 150/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | || || || || || ||||||||| | || || | || || || ||
Sbjct 92383 ATGCAAATTTTCGTTAAGACGTTGACCGGAAAAACCATAACCCTTGAGGTTGAGCCCTCG 92324
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||| ||||| | ||||| ||||||| ||||| || || || || || ||||||
Sbjct 92323 GATACCATCGAAAACGTAAAGGCAAAAATTCAGGATAAGGAAGGCATCCCCCCTGATCAG 92264
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352
|| | || || | || || ||||||||||| |||| | | |||| ||||||||
Sbjct 92263 CAGCGTCTTATATTCGCTGGAAAACAACTCGAGGATGGACGTACCCTGTC--CGATTACA 92206
Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTG 25384
||||||| |||||||| || | || || |||
Sbjct 92205 ATATTCAGAAAGAATCAACTCTGCACTTGGTG 92174
Score = 96.9 bits (106), Expect = 3e-15
Identities = 148/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233
|||||| | || || || || | || || || | ||||| | || || ||| |||
Sbjct 93671 CATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACTATCACACTTGAGGTTGAACCCAG 93612
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
|||||| || || | || || ||||| || || |||||||| || || || ||
Sbjct 93611 CGATACAATTGAAAACGTGAAGGCCAAAATCCAGGACAAGGAGGGTATTCCTCCTGACCA 93552
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
|||| | ||||||| || ||| ||||||||||| |||| | | | |||| || |||||
Sbjct 93551 GCAACGTCTCATTTTCGCCGGAAAACAACTCGAGGATGGTCGCACACTCAGTGACTACAA 93492
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384
|||||||| ||| ||| |||| || |||
Sbjct 93491 CATTCAAAAGGAAAGCACGCTTCACTTGGTG 93461
Score = 93.3 bits (102), Expect = 4e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231
|| |||||| | ||||| ||||||||||| || ||| | ||||| | || || || |
Sbjct 94129 AAAATGCAAATCTTTGTGAAAACATTAACTGGGAAAACTATCACTCTAGACGTAGAGGGA 94070
Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291
|| || |||||| | || || ||| || |||||||| ||||| || || |||
Sbjct 94069 TCGGACACGATCGAGAACGTCAAGACAAAGATCCAGGATAAAGAAGGTATTCCACCAGAT 94010
Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351
||||| | || |||| || ||||| || || || || | | | | || |||||||
Sbjct 94009 CAGCAGCGTCTGATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACACTCTCCGATTAC 93950
Query 25352 AATATTCAAAAAGAATCCACCATTCA 25377
||||| || || ||||| || ||||
Sbjct 93949 AATATACAGAAGGAATCGACTCTTCA 93924
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | ||||| || || | || |||||| | ||||| | ||||| ||| ||| |
Sbjct 93898 ATGCAGATCTTTGTGAAGACGCTCACTGGAAAAACCATCACCCTTGAAGTTGAACCCAGC 93839
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||| || || | || || |||||| ||||||||||| || || || ||||||
Sbjct 93838 GATACAATTGAAAATGTGAAGGCAAAAATCCAGGATAAAGAGGGCATCCCTCCGGATCAG 93779
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||| | || || | | ||||| ||||| ||||| | | | || ||||| |||
Sbjct 93778 CAACGTCTGATCTTTGCTGGCAAGCAACTGGAAGACGGCCGTACCCTCTCAGATTATAAT 93719
Query 25355 ATTCAAAAAGAATCCAC 25371
|||||||| || || ||
Sbjct 93718 ATTCAAAAGGAGTCGAC 93702
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/199 (70%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | || |||||||| | |||||||| ||||||| | || || ||| | | |
Sbjct 100434 ATGCAGATCTTCGTAAAAACGCTGACCGGAAAGACGATCACTCTAGAGGTTGAACCTAGC 100375
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||| ||||| | || || ||| ||| || || || ||||| ||||||||||||
Sbjct 100374 GATACAATCGAAAACGTTAAGGCAAAGATTCAAGACAAGGAAGGTATTCCGCCCGATCAG 100315
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352
||||| | || | | ||||| || || ||||| | ||| | ||| || || |
Sbjct 100314 CAAAGGTTAATCTTTGCTGGCAAGCAGCTTGAAGACGGCCGAACGCTATCA--GACTATA 100257
Query 25353 ATATTCAAAAAGAATCCAC 25371
| ||||| ||||| || ||
Sbjct 100256 ACATTCAGAAAGAGTCTAC 100238
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 444980633871360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |