Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq17800 82.4 9e-11 >seq17800 Length=133550 Score = 82.4 bits (90), Expect = 9e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 146962 GTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGC 147021 || ||||| ||||| ||| || | || |||| | || | |||| || ||||| Sbjct 12176 GTATGCACGAAGTCGCCCCCTTTCAATCCAGTCAGACGAGCGATGATGTGCGTAAGCAGA 12235 Query 147022 GAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGC 147081 | ||| ||| || ||||| || || || ||||||||||| | | ||||||||| Sbjct 12236 GCGTAAGAGGCAATATTGAACGGAACACCGAGGCCCATGTCGGCGCTGCGCTGGTACAGT 12295 Query 147082 TGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGC 147141 || || |||| || || | ||| |||||||| || ||| ||| || ||||| ||| Sbjct 12296 TGACATGAGACTTCACCTTTGGCGACGTAAAATTGAGCCAGACAGTGACAGGGCGGAAGC 12355 Query 147142 GCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGA 147176 ||||| |||| |||| | ||||| ||||| Sbjct 12356 GCCATCTTTGGCAAATCCGAGACATTCCATGCCGA 12390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583338860467200