Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq19807 105 1e-16
seq19684 100 4e-15
seq17297 100 4e-15
seq973 100 4e-15
seq1092 95.1 2e-13
seq13314 91.5 2e-12
seq1896 91.5 2e-12
>seq19807
Length=15530
Score = 105 bits (116), Expect = 1e-16
Identities = 186/259 (72%), Gaps = 18/259 (7%)
Strand=Plus/Plus
Query 2129612 CTTCAAGACGGTCCAAAATGTCCATGCTGCGCGCTTTGGGCGCGCCCGTCATCGAGCC-- 2129669
|||| || ||||| | || ||||| | || || |||||||| ||||| |||||
Sbjct 5323 CTTCGAGCCGGTCGATGATCTCCATCGTCCGTTTCTTCGGCGCGCCGGTCATAGAGCCCC 5382
Query 2129670 -TGGGGGAAAAGCCG-CGCGCACGAGGTCCAGCGCCGTCTGTTGTCGGTC-CAACAGGCC 2129726
|||| |||| | ||||||| ||||| || ||||| | ||| | || | |||
Sbjct 5383 CTGGG----AAGCAGGCGCGCACCGCGTCCACCGA-GTCTGCTCCCGGCCGCAGCCTGCC 5437
Query 2129727 GTCG-ACGGTGGTCACCATCTGGTGCACGGCGGCATAGGTCTCGATCGCCATCAGCCGGC 2129785
||| || |||| ||||| ||| ||||||| ||| ||| |||| | |||||||||
Sbjct 5438 -TCGCACCGTGGACACCAGCTGATGCACGGTGGCGTAGCTCTCCACGGCCATCAGCTT-- 5494
Query 2129786 CGCGCGGCACGACGACGCTGCCGGGCGCGCAGCACACGCTCAGGTCGTTGCGCACCAGAT 2129845
|| ||| |||||| || ||||| | ||||| | | |||||||||||| | ||| |
Sbjct 5495 CG-GCGTCACGAC--CG-TGCCGACCTCGCAGACCTGGGACAGGTCGTTGCGGAGCAGGT 5550
Query 2129846 CGACGATCATGAGGTTCTC 2129864
| |||||||||||||||||
Sbjct 5551 CCACGATCATGAGGTTCTC 5569
>seq19684
Length=200431
Score = 100 bits (110), Expect = 4e-15
Identities = 162/232 (70%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|| ||||| ||||| |||||||| ||||| |||| |||| || |||| |
Sbjct 199089 ATTTACAAAGTGCTTAAGCAGGTCCACCCGGACACCGG-----CATC-TCATCCAAGGCG 199036
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
|||||||||||||| ||||| || ||||| || |||| | |||| |||| ||
Sbjct 199035 ATGTCGATCATGAATTCGTTCGTGAACGATATCTTCGAAAGGATCGCTGCCGAAGCGTCC 198976
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
||||| | | || |||||| | || ||| || | ||| |||||||||||||
Sbjct 198975 CGCCTCTCACACTACAACAAAAGGTCGACCATCACGTCGAGGGAGGTCCAGACCGCCGTC 198916
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| ||| | | | || || ||||||| ||||||||| |||||||| ||||
Sbjct 198915 AGGCTGCTGCTTCCTGGTGAGCTGGCCAAGCACGCCGTTTCCGAGGGGACCA 198864
>seq17297
Length=3878
Score = 100 bits (110), Expect = 4e-15
Identities = 162/232 (70%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|| |||||||| || ||||| || |||||| |||| | ||| || ||| ||
Sbjct 3239 ATTTACAAGGTCCTTAAGCAAGTCCACCCCGACACCGGT-----ATC-TCGTCGAAGGCC 3292
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
|||||||| |||||||| || || |||||||| |||| | |||| ||||||||
Sbjct 3293 ATGTCGATTATGAACTCATTCGTAAACGACATTTTCGAGAGAATCGCTGCCGAGGCCTCC 3352
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| || ||| || ||||||| | || ||| | | || ||| | |||||||||||
Sbjct 3353 CGTCTCTCGCACTACAACAAGAGATCGACCATCACCTCTCGGGAGGTTCAGACCGCCGTC 3412
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| || | | | || || ||||||| |||||||| || ||||| ||||
Sbjct 3413 AGGCTACTGCTCCCTGGTGAGCTGGCCAAACACGCCGTGTCTGAGGGAACCA 3464
>seq973
Length=50102
Score = 100 bits (110), Expect = 4e-15
Identities = 162/232 (70%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|| |||||||| || ||||| || |||||| |||| | ||| || ||| ||
Sbjct 635 ATTTACAAGGTCCTTAAGCAAGTCCACCCCGACACCGGT-----ATC-TCGTCGAAGGCC 688
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
|||||||| |||||||| || || |||||||| |||| | |||| ||||||||
Sbjct 689 ATGTCGATTATGAACTCATTCGTAAACGACATTTTCGAGAGAATCGCTGCCGAGGCCTCC 748
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| || ||| || ||||||| | || ||| | | || ||| | |||||||||||
Sbjct 749 CGTCTCTCGCACTACAACAAGAGATCGACCATCACCTCTCGGGAGGTTCAGACCGCCGTC 808
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| || | | | || || ||||||| |||||||| || ||||| ||||
Sbjct 809 AGGCTACTGCTCCCTGGTGAGCTGGCCAAACACGCCGTGTCTGAGGGAACCA 860
>seq1092
Length=2021
Score = 95.1 bits (104), Expect = 2e-13
Identities = 161/232 (69%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|| |||||||| || ||||| || |||||| |||| | ||| || ||| ||
Sbjct 632 ATTTACAAGGTCCTTAAGCAAGTCCACCCCGACACCGGT-----ATC-TCGTCGAAGGCC 685
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
|||||||| |||||||| || || |||||||| |||| | |||| ||||||||
Sbjct 686 ATGTCGATTATGAACTCATTCGTAAACGACATTTTCGAGAGAATCGCTGCCGAGGCCTCC 745
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| || ||| || ||||||| | || ||| | | || ||| | |||||||||||
Sbjct 746 CGTCTCTCGCACTACAACAAGAGATCGACCATCACCTCTCGGGAGGTTCAGACCGCCGTC 805
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| || | | | || || |||||| |||||||| || ||||| ||||
Sbjct 806 AGGCTACTGCTCCCTGGTGAGTTGGCCAAACACGCCGTGTCTGAGGGAACCA 857
>seq13314
Length=1393
Score = 91.5 bits (100), Expect = 2e-12
Identities = 127/178 (71%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024
||| |||||||||| |||||||| || || |||||||| |||| | |||| |||||
Sbjct 56 AAGGCCATGTCGATTATGAACTCATTCGTAAACGACATTTTCGAGAGAATCGCTGCCGAG 115
Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084
||| || || ||| || ||||||| | || ||| | | || ||| | ||||||
Sbjct 116 GCCTCCCGTCTCTCGCACTACAACAAGAGATCGACCATCACCTCTCGGGAGGTTCAGACC 175
Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| | || | | | || || ||||||| |||||||| || ||||| ||||
Sbjct 176 GCCGTCAGGCTTCTGCTCCCTGGTGAGCTGGCCAAACACGCCGTGTCTGAGGGAACCA 233
>seq1896
Length=13079
Score = 91.5 bits (100), Expect = 2e-12
Identities = 161/232 (69%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||||||| || ||||| ||||| || ||| |||| | ||||| || || ||
Sbjct 9750 ATCTACAAAGTCCTCAAACAGGTCCATCCCGATACCG---GAATTTCCTCGAA--AG-CC 9697
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||||| ||||||||||||||||| |||||||| |||| | || | ||||||||
Sbjct 9696 ATGTCAATCATGAACTCGTTTGTTAACGACATCTTCGAGAGAATTGCTGCCGAGGCCTCC 9637
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| ||| | | | |||||| | || ||| | | || ||| | ||||| |||||
Sbjct 9636 CGTCTGTCTCATTATAACAAGAGGTCGACCATCACCTCTCGAGAGGTTCAGACTGCCGTT 9577
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| || | | | || |||||||||| ||||| || || ||||| ||||
Sbjct 9576 AGGCTACTGCTACCTGGTGAACTGGCCAAACACGCTGTGTCTGAGGGTACCA 9525
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7175838952816576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |