Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq19807 105 1e-16 seq19684 100 4e-15 seq17297 100 4e-15 seq973 100 4e-15 seq1092 95.1 2e-13 seq13314 91.5 2e-12 seq1896 91.5 2e-12 >seq19807 Length=15530 Score = 105 bits (116), Expect = 1e-16 Identities = 186/259 (72%), Gaps = 18/259 (7%) Strand=Plus/Plus Query 2129612 CTTCAAGACGGTCCAAAATGTCCATGCTGCGCGCTTTGGGCGCGCCCGTCATCGAGCC-- 2129669 |||| || ||||| | || ||||| | || || |||||||| ||||| ||||| Sbjct 5323 CTTCGAGCCGGTCGATGATCTCCATCGTCCGTTTCTTCGGCGCGCCGGTCATAGAGCCCC 5382 Query 2129670 -TGGGGGAAAAGCCG-CGCGCACGAGGTCCAGCGCCGTCTGTTGTCGGTC-CAACAGGCC 2129726 |||| |||| | ||||||| ||||| || ||||| | ||| | || | ||| Sbjct 5383 CTGGG----AAGCAGGCGCGCACCGCGTCCACCGA-GTCTGCTCCCGGCCGCAGCCTGCC 5437 Query 2129727 GTCG-ACGGTGGTCACCATCTGGTGCACGGCGGCATAGGTCTCGATCGCCATCAGCCGGC 2129785 ||| || |||| ||||| ||| ||||||| ||| ||| |||| | ||||||||| Sbjct 5438 -TCGCACCGTGGACACCAGCTGATGCACGGTGGCGTAGCTCTCCACGGCCATCAGCTT-- 5494 Query 2129786 CGCGCGGCACGACGACGCTGCCGGGCGCGCAGCACACGCTCAGGTCGTTGCGCACCAGAT 2129845 || ||| |||||| || ||||| | ||||| | | |||||||||||| | ||| | Sbjct 5495 CG-GCGTCACGAC--CG-TGCCGACCTCGCAGACCTGGGACAGGTCGTTGCGGAGCAGGT 5550 Query 2129846 CGACGATCATGAGGTTCTC 2129864 | ||||||||||||||||| Sbjct 5551 CCACGATCATGAGGTTCTC 5569 >seq19684 Length=200431 Score = 100 bits (110), Expect = 4e-15 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||| ||||| |||||||| ||||| |||| |||| || |||| | Sbjct 199089 ATTTACAAAGTGCTTAAGCAGGTCCACCCGGACACCGG-----CATC-TCATCCAAGGCG 199036 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||| ||||| || ||||| || |||| | |||| |||| || Sbjct 199035 ATGTCGATCATGAATTCGTTCGTGAACGATATCTTCGAAAGGATCGCTGCCGAAGCGTCC 198976 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| | | || |||||| | || ||| || | ||| ||||||||||||| Sbjct 198975 CGCCTCTCACACTACAACAAAAGGTCGACCATCACGTCGAGGGAGGTCCAGACCGCCGTC 198916 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| | | | || || ||||||| ||||||||| |||||||| |||| Sbjct 198915 AGGCTGCTGCTTCCTGGTGAGCTGGCCAAGCACGCCGTTTCCGAGGGGACCA 198864 >seq17297 Length=3878 Score = 100 bits (110), Expect = 4e-15 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || |||||||| || ||||| || |||||| |||| | ||| || ||| || Sbjct 3239 ATTTACAAGGTCCTTAAGCAAGTCCACCCCGACACCGGT-----ATC-TCGTCGAAGGCC 3292 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||| |||||||| || || |||||||| |||| | |||| |||||||| Sbjct 3293 ATGTCGATTATGAACTCATTCGTAAACGACATTTTCGAGAGAATCGCTGCCGAGGCCTCC 3352 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || ||| || ||||||| | || ||| | | || ||| | ||||||||||| Sbjct 3353 CGTCTCTCGCACTACAACAAGAGATCGACCATCACCTCTCGGGAGGTTCAGACCGCCGTC 3412 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | | | || || ||||||| |||||||| || ||||| |||| Sbjct 3413 AGGCTACTGCTCCCTGGTGAGCTGGCCAAACACGCCGTGTCTGAGGGAACCA 3464 >seq973 Length=50102 Score = 100 bits (110), Expect = 4e-15 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || |||||||| || ||||| || |||||| |||| | ||| || ||| || Sbjct 635 ATTTACAAGGTCCTTAAGCAAGTCCACCCCGACACCGGT-----ATC-TCGTCGAAGGCC 688 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||| |||||||| || || |||||||| |||| | |||| |||||||| Sbjct 689 ATGTCGATTATGAACTCATTCGTAAACGACATTTTCGAGAGAATCGCTGCCGAGGCCTCC 748 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || ||| || ||||||| | || ||| | | || ||| | ||||||||||| Sbjct 749 CGTCTCTCGCACTACAACAAGAGATCGACCATCACCTCTCGGGAGGTTCAGACCGCCGTC 808 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | | | || || ||||||| |||||||| || ||||| |||| Sbjct 809 AGGCTACTGCTCCCTGGTGAGCTGGCCAAACACGCCGTGTCTGAGGGAACCA 860 >seq1092 Length=2021 Score = 95.1 bits (104), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || |||||||| || ||||| || |||||| |||| | ||| || ||| || Sbjct 632 ATTTACAAGGTCCTTAAGCAAGTCCACCCCGACACCGGT-----ATC-TCGTCGAAGGCC 685 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||| |||||||| || || |||||||| |||| | |||| |||||||| Sbjct 686 ATGTCGATTATGAACTCATTCGTAAACGACATTTTCGAGAGAATCGCTGCCGAGGCCTCC 745 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || ||| || ||||||| | || ||| | | || ||| | ||||||||||| Sbjct 746 CGTCTCTCGCACTACAACAAGAGATCGACCATCACCTCTCGGGAGGTTCAGACCGCCGTC 805 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | | | || || |||||| |||||||| || ||||| |||| Sbjct 806 AGGCTACTGCTCCCTGGTGAGTTGGCCAAACACGCCGTGTCTGAGGGAACCA 857 >seq13314 Length=1393 Score = 91.5 bits (100), Expect = 2e-12 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| |||||||||| |||||||| || || |||||||| |||| | |||| ||||| Sbjct 56 AAGGCCATGTCGATTATGAACTCATTCGTAAACGACATTTTCGAGAGAATCGCTGCCGAG 115 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 ||| || || ||| || ||||||| | || ||| | | || ||| | |||||| Sbjct 116 GCCTCCCGTCTCTCGCACTACAACAAGAGATCGACCATCACCTCTCGGGAGGTTCAGACC 175 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | || | | | || || ||||||| |||||||| || ||||| |||| Sbjct 176 GCCGTCAGGCTTCTGCTCCCTGGTGAGCTGGCCAAACACGCCGTGTCTGAGGGAACCA 233 >seq1896 Length=13079 Score = 91.5 bits (100), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| || ||||| ||||| || ||| |||| | ||||| || || || Sbjct 9750 ATCTACAAAGTCCTCAAACAGGTCCATCCCGATACCG---GAATTTCCTCGAA--AG-CC 9697 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||||||||| |||||||| |||| | || | |||||||| Sbjct 9696 ATGTCAATCATGAACTCGTTTGTTAACGACATCTTCGAGAGAATTGCTGCCGAGGCCTCC 9637 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||| | | | |||||| | || ||| | | || ||| | ||||| ||||| Sbjct 9636 CGTCTGTCTCATTATAACAAGAGGTCGACCATCACCTCTCGAGAGGTTCAGACTGCCGTT 9577 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | | | || |||||||||| ||||| || || ||||| |||| Sbjct 9576 AGGCTACTGCTACCTGGTGAACTGGCCAAACACGCTGTGTCTGAGGGTACCA 9525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175838952816576