Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq7231 122 8e-23 seq19980 100 3e-16 >seq7231 Length=219762 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | || ||| || | ||| | || |||||||||||| || ||||| | Sbjct 93672 CCACCGCGAAGCCGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGAG 93731 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| ||||| ||||| || ||||| |||| || ||||| |||| ||| Sbjct 93732 AGGGTACGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGG 93791 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||| || ||| ||| ||| ||||| | || | | || ||||| | ||| || Sbjct 93792 ATGCCCTCTTTATCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAACT 93851 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| ||||| || || | || |||||||| |||||||| Sbjct 93852 TCAAGGGTGATGGTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | || | |||||| || | ||| || ||||||||||||||||| || Sbjct 93442 TTCCGCCACGGAGCCGAAGCACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTCAC 93501 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || | || || || || || || || || || | || |||||||| | || Sbjct 93502 TGAGTGTGCGACCATCCTCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGGAG 93561 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | |||||||||| ||| || ||||| || | | || ||||| | ||| | Sbjct 93562 GAATACCCTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCAATTGTATCGCTGGGTTCAA 93621 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| | ||||| || || ||||| | || || || || |||||||| Sbjct 93622 CCTCAAGTGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 93670 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||| | ||| || || || ||||| || |||||||| || | | || || |||| || Sbjct 92817 CACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACCGTCCTC 92876 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || || || || ||||| || | ||||| ||||| | |||| || ||| ||||| | Sbjct 92877 GAGTTGTTTTCCAGCAAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTGTCT-T 92935 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 || ||| |||| ||| || | ||||||| | || || || | || || |||| Sbjct 92936 GAATTTTCGCTTTTACGTTCTCAATGGTGTCGCTTGGCTCAACTTCAAGTGTTATTGTTT 92995 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | ||||| | ||||||||||| |||||||||| Sbjct 92996 TTCCCGTAAGGGTTTTCACAAAAATCTGCATTC 93028 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || |||| |||| || ||||| ||||||||||| Sbjct 92608 TCTTTCTGGATGTTGTAGTCTGACAGTGTTCTACCGTCCTCGAGCTGTTTACCCGCAAAG 92667 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGT 35664 ||||| ||||||||||| | || | | ||||||||| ||| ||| | ||||| | Sbjct 92668 ATCAATCGCTGCTGGTCAGGCGGGATACCTTCCTTGTCC-TGAATTTTCGCCTTCACGTT 92726 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || | ||| ||||||| || || || || ||||||||||| || || Sbjct 92727 CTCGATGGTATCTGAGGGTTCGACCTCCAAGGTAATGGTCTTCCCCGTCAAAGTCTTTAC 92786 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 92787 GAAGATTTGCAT 92798 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| ||||| || ||||| || | | || || |||| |||| ||| || || ||||| Sbjct 100699 CTCTTTTTGGATATTGTAGTCCGAAAGAGTACGTCCGTCTTCCAACTGTTTTCCAGCAAA 100758 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || || | ||| ||||| | |||| | ||||||||| |||||| ||| | | | Sbjct 100759 GATTAATCTCTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGAATCTTTGCCTTGACATT 100818 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | || || ||||||||||| | ||||| || ||||| || | |||||||| Sbjct 100819 TTCGATTGTATCTGAAGATTCCACCTCAAGGGTGATAGTCTTACCGGTTAGGGTTTTCAC 100878 Query 35725 AAATATCTGCATT 35737 || ||||||||| Sbjct 100879 GAAAATCTGCATT 100891 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || || |||||||||| | || || |||| || |||||||| || || || Sbjct 93936 TCCTTCTGTATATTGTAATCGGAGAGTGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAA 93995 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| |||||||| || | |||| | || || ||| ||||||| ||| | | Sbjct 93996 ATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTATCCTGGATCTTTGTCTTGACGTTC 94055 Query 35666 GCCACCGTGTCGCTCGATTCC---ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | |||||| |||| || || || | ||||| ||||| || || || |||||| Sbjct 94056 TCGATCGTGTC---CGATCCCTCTACGTCTAGAGTGATAGTTTTCCCAGTTAATGTTTTC 94112 Query 35723 ACAAATATCTGCATT 35737 ||||| || |||||| Sbjct 94113 ACAAAGATTTGCATT 94127 >seq19980 Length=299602 Score = 100 bits (110), Expect = 3e-16 Identities = 166/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 35501 TCTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTG 35560 |||| || || || || | |||| ||||| ||| | ||| ||| |||||||||||| Sbjct 145199 TCTTCATCACCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTG 145140 Query 35561 TAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGG 35620 || |||| | || || | || || ||||| || || || || ||||||| || || Sbjct 145139 TAGTCGGAGAGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGA 145080 Query 35621 TCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT-GCCACCGTGTCGCT 35679 || | |||| | ||||||| | ||| ||| |||| | ||| | | ||| ||||| Sbjct 145079 TCGGGGGGAATTCCTTCCTTGT-CTTGAATTTTGGCTTTAACGTTCTCAATCGTATCGCT 145021 Query 35680 CGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || || | ||||||||||| || || | ||||| ||||| |||||||| Sbjct 145020 TGGCTCGACTTCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || ||||||||||| | | || || |||| |||| ||| ||||| ||||| Sbjct 144470 TCTTTCTGGATGTTGTAATCAGAAAGAGTACGTCCGTCTTCCAACTGTTTACCAGCAAAG 144411 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || |||| ||||||||| | |||| | |||||| || ||||| ||| | | || Sbjct 144410 ATTAACCTCTGCTGGTCTGGGGGAATCCCCTCCTTATCTTGAATCTTCGCCTTGACATTT 144351 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || || |||||||| | ||||| || || || || |||||||||||| Sbjct 144350 TCGATTGTATCAGAAGACTCCACCTCAAGGGTGATAGTCTTTCCGGTTAAAGTTTTCACA 144291 Query 35726 AATATCTGCATT 35737 || || |||||| Sbjct 144290 AAAATTTGCATT 144279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450678377155840