Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_026584.1 Length=109871 Score E Sequences producing significant alignments: (Bits) Value seq7279 197 1e-45 >seq7279 Length=10654 Score = 197 bits (218), Expect = 1e-45 Identities = 331/470 (70%), Gaps = 9/470 (2%) Strand=Plus/Plus Query 42793 GACCCGTTCTGGCCGGGTAACCGGGATAAGGCCCGCGCCGCCGGCCTGATCCTGGCGGGC 42852 ||| | || ||||||||| ||| | ||||| | | |||||| | ||||||||| Sbjct 7534 GACGCCTTATGGCCGGGTTTCCGCGCCCAGGCCGGGGAGCAAGGCCTGCTGCTGGCGGGC 7593 Query 42853 TATCACTACGTCCGCACGGGGGAC--CCTGC-CGCTCAGGCAAAAACCTTCGTGGAGCAC 42909 || |||||| ||||| | | ||| || || || ||||| | |||||||||| |||| Sbjct 7594 TACCACTACATCCGCGCCGACGACGACCCGCGCGAGCAGGCCGAGACCTTCGTGGGGCAC 7653 Query 42910 CTGGGGGATAAGTCCATCCCCGCCATGTTGGATTTTGAGGACGGCTCGGGGAACATCGAG 42969 || | || | | | ||||| ||| | ||||| ||||||||||| ||| | |||| Sbjct 7654 CTCGCCGACCTGACGACGCCCGCGATGCTCGATTTCGAGGACGGCTCCGGGGATATCGGC 7713 Query 42970 CAGTTCTGGGCGGTCAAGGCCGAGATTGAAAAGCTCGGCGTCCAG-GTCCGCCTGTCCTA 43028 ||||||||| || | |||||| ||| ||||||| | || ||||| || ||||| Sbjct 7714 GTGTTCTGGGCCGTGCGCGACGAGATCGAAGCCCTCGGCG-CGAGCGTCCGGCTCTCCTA 7772 Query 43029 CATTCCTGACTGGTACTGGGAGCGCATCGGAAAGCCGGACCTGTCCAAGGTCCCCGGTCT 43088 ||| || | ||||||||||||| ||||||| || ||| | | | |||||| || Sbjct 7773 CATCCCCGGCTGGTACTGGGAGAGCATCGGCTCCCCCGACATCACTGGAGCCCCCGGCCT 7832 Query 43089 GATCTCGTCCGAATACGTCAGCGGAACCGGATACGCATCGGTGCTATATC--CGGGTAAT 43146 || ||| ||||||| ||| |||| |||| || | || |||| | || | Sbjct 7833 CGTCCAATCCCGCTACGTCACCGGCTCCGGCGACGCCTCCGCCCTCTATCAGCAAGT-GT 7891 Query 43147 TCAAGCAACTTCTGGAAAGCGTACGGCGGCCGGACGCCCGACGTCCTGCAATTCACCGAC 43206 | || | | | ||| | | ||||||||| || |||| |||||| |||||||||||| Sbjct 7892 CCGAGGAGC-TGTGGGAGCCCTACGGCGGCGCGAGCCCCGTCGTCCTCCAATTCACCGAC 7950 Query 43207 AGGGCCCTTGTGGCTGGCAAGTCGGTCGACGCTAACGCTTTCCGGGGAAC 43256 | |||||||| || || || | ||||||| ||||| ||||||||||| Sbjct 7951 CGAGCCCTTGTCGCCGGGAACACCCTCGACGCCAACGCCTTCCGGGGAAC 8000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351374812055296