Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_026590.1
Length=90460
Score E
Sequences producing significant alignments: (Bits) Value
seq7279 170 1e-37
>seq7279
Length=10654
Score = 170 bits (188), Expect = 1e-37
Identities = 325/471 (69%), Gaps = 11/471 (2%)
Strand=Plus/Plus
Query 29546 GACCCTTTCTGGCCGGGTAATCGGGACAAGGCTCGTGAAGCG-GGCCTGATCCTCGCCGG 29604
||| | || ||||||||| || | | |||| || | ||| |||||| | || || ||
Sbjct 7534 GACGCCTTATGGCCGGGTTTCCGCGCCCAGGC-CGGGGAGCAAGGCCTGCTGCTGGCGGG 7592
Query 29605 ATACCACTACGTCCGCACCGGCGAC--CCAGC-CGCGCAGGCACGGACCTTCGTCGAGCA 29661
||||||||| ||||| ||| |||| || || || |||||| ||||||||| | |||
Sbjct 7593 CTACCACTACATCCGCGCCGACGACGACCCGCGCGAGCAGGCCGAGACCTTCGTGGGGCA 7652
Query 29662 CCTGGGCGATAAGTCAATTCCCGCCATGCTGGATTTCGAGGACGGATCGGGAAACATCGA 29721
||| | ||| | | | ||||| ||||| |||||||||||||| || || | ||||
Sbjct 7653 CCTCGCCGACCTGACGACGCCCGCGATGCTCGATTTCGAGGACGGCTCCGGGGATATCGG 7712
Query 29722 TCAGTTCTGGGCAGTTAAGGCAGAAATCGAGAAGCTTGGCGTCAGTGTGCGCCTTTCCTA 29781
||||||||| || | || ||||| || |||| || || || || |||||
Sbjct 7713 CGTGTTCTGGGCCGTGCGCGACGAGATCGAAGCCCTCGGCGCGAGCGTCCGGCTCTCCTA 7772
Query 29782 CATTCCGGACTGGTATTGGGAGCGCATCGGGAAACCCGACCTCTCAAAGGTTCCGGGACT 29841
||| || | |||||| |||||| ||||||| |||||| || | | || || ||
Sbjct 7773 CATCCCCGGCTGGTACTGGGAGAGCATCGGCTCCCCCGACATCACTGGAGCCCCCGGCCT 7832
Query 29842 AATCTCGTCCGAGTATGTCAGCGGCACGGGCTACGCATCGGTGCTGTACCCGGGCAA--- 29898
|| ||| || |||| |||| | ||| |||| || | || || | ||||
Sbjct 7833 CGTCCAATCCCGCTACGTCACCGGCTCCGGCGACGCCTCCGCCCTCTATC--AGCAAGTG 7890
Query 29899 TTCAAGCAACTTCTGGAAGGCCTACGGCGGCCGAACCCCCGACGTCCTGCAGTTCACCGA 29958
| | || | | | ||| || ||||||||||| | ||||| |||||| || ||||||||
Sbjct 7891 TCCGAGGAGC-TGTGGGAGCCCTACGGCGGCGCGAGCCCCGTCGTCCTCCAATTCACCGA 7949
Query 29959 CAGGGCGTTGGTGGCAGGCAAGTCTGTTGACGCGAACGCTTTCCGGGGCAC 30009
| | || | || || || || | | ||||| ||||| |||||||| ||
Sbjct 7950 CCGAGCCCTTGTCGCCGGGAACACCCTCGACGCCAACGCCTTCCGGGGAAC 8000
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 289275091784288
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |