Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_026590.1 Length=90460 Score E Sequences producing significant alignments: (Bits) Value seq7279 170 1e-37 >seq7279 Length=10654 Score = 170 bits (188), Expect = 1e-37 Identities = 325/471 (69%), Gaps = 11/471 (2%) Strand=Plus/Plus Query 29546 GACCCTTTCTGGCCGGGTAATCGGGACAAGGCTCGTGAAGCG-GGCCTGATCCTCGCCGG 29604 ||| | || ||||||||| || | | |||| || | ||| |||||| | || || || Sbjct 7534 GACGCCTTATGGCCGGGTTTCCGCGCCCAGGC-CGGGGAGCAAGGCCTGCTGCTGGCGGG 7592 Query 29605 ATACCACTACGTCCGCACCGGCGAC--CCAGC-CGCGCAGGCACGGACCTTCGTCGAGCA 29661 ||||||||| ||||| ||| |||| || || || |||||| ||||||||| | ||| Sbjct 7593 CTACCACTACATCCGCGCCGACGACGACCCGCGCGAGCAGGCCGAGACCTTCGTGGGGCA 7652 Query 29662 CCTGGGCGATAAGTCAATTCCCGCCATGCTGGATTTCGAGGACGGATCGGGAAACATCGA 29721 ||| | ||| | | | ||||| ||||| |||||||||||||| || || | |||| Sbjct 7653 CCTCGCCGACCTGACGACGCCCGCGATGCTCGATTTCGAGGACGGCTCCGGGGATATCGG 7712 Query 29722 TCAGTTCTGGGCAGTTAAGGCAGAAATCGAGAAGCTTGGCGTCAGTGTGCGCCTTTCCTA 29781 ||||||||| || | || ||||| || |||| || || || || ||||| Sbjct 7713 CGTGTTCTGGGCCGTGCGCGACGAGATCGAAGCCCTCGGCGCGAGCGTCCGGCTCTCCTA 7772 Query 29782 CATTCCGGACTGGTATTGGGAGCGCATCGGGAAACCCGACCTCTCAAAGGTTCCGGGACT 29841 ||| || | |||||| |||||| ||||||| |||||| || | | || || || Sbjct 7773 CATCCCCGGCTGGTACTGGGAGAGCATCGGCTCCCCCGACATCACTGGAGCCCCCGGCCT 7832 Query 29842 AATCTCGTCCGAGTATGTCAGCGGCACGGGCTACGCATCGGTGCTGTACCCGGGCAA--- 29898 || ||| || |||| |||| | ||| |||| || | || || | |||| Sbjct 7833 CGTCCAATCCCGCTACGTCACCGGCTCCGGCGACGCCTCCGCCCTCTATC--AGCAAGTG 7890 Query 29899 TTCAAGCAACTTCTGGAAGGCCTACGGCGGCCGAACCCCCGACGTCCTGCAGTTCACCGA 29958 | | || | | | ||| || ||||||||||| | ||||| |||||| || |||||||| Sbjct 7891 TCCGAGGAGC-TGTGGGAGCCCTACGGCGGCGCGAGCCCCGTCGTCCTCCAATTCACCGA 7949 Query 29959 CAGGGCGTTGGTGGCAGGCAAGTCTGTTGACGCGAACGCTTTCCGGGGCAC 30009 | | || | || || || || | | ||||| ||||| |||||||| || Sbjct 7950 CCGAGCCCTTGTCGCCGGGAACACCCTCGACGCCAACGCCTTCCGGGGAAC 8000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 289275091784288