Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_026606.1 Length=71200 Score E Sequences producing significant alignments: (Bits) Value seq19061 250 1e-61 >seq19061 Length=15585 Score = 250 bits (276), Expect = 1e-61 Identities = 269/356 (76%), Gaps = 0/356 (0%) Strand=Plus/Minus Query 62726 ATGGCCGGTGAAACCACCATAACGGTGATAGGCAATCTGACGAACGATCCCGAATTACGG 62785 ||||| || || ||| ||| || ||| | ||||| ||||| ||||||||| | ||| Sbjct 14215 ATGGCAGGCGACACCGTCATCACTGTGGTCGGCAACTTGACGGCCGATCCCGAGCTGCGG 14156 Query 62786 TTCACGCCGTCCGGCAGCCCGGTGGCCAACTTCACCATTGCCAGCACCCCGCGCACGTTC 62845 ||||| ||| ||||| | || || ||||||||| | || || || || || ||| Sbjct 14155 TTCACACCGACCGGCGCGGCCGTCGCGAACTTCACCGTCGCGTCGACGCCTCGGACCTTC 14096 Query 62846 GACCGGCAGAGCAACGAGTGGAAGGACGGGGAAACCCTGTTTTTGCGCGCGAGTATCTGG 62905 ||||| |||| |||||||||||||||||| ||| | ||||| |||||| | |||||| Sbjct 14095 GACCGTCAGACCAACGAGTGGAAGGACGGCGAAGCGCTGTTCTTGCGCTGCAACATCTGG 14036 Query 62906 CGCGACCCCGCGGAGAACGTGGCAGAGTCCCTGACCAAGGGCATGCGCGTGATTGTGTCC 62965 ||||| |||||||||||||||| ||||| ||||||| |||| |||||| || ||| || Sbjct 14035 CGCGAGGCCGCGGAGAACGTGGCCGAGTCGCTGACCAGGGGCGCGCGCGTCATCGTGACC 13976 Query 62966 GGGCGGCTCAAGTCCCGCAGCTACGAGACCAAGGAAGGCGAAAAGCGCACGGTCATTGAG 63025 || |||||||| ||| ||||||||| || ||||| ||||| || ||| | ||| Sbjct 13975 GGCAGGCTCAAGCAGCGCTCGTACGAGACCCGCGAGGGCGAGAAGCGGACCGTCGTCGAG 13916 Query 63026 CTTGAGGTGGACGAAATTGGCCCGTCTTTGCGCTATGCCAACGCCAAGGTGAACCG 63081 || || || ||||| || || || || ||||||| ||| ||| || |||||||| Sbjct 13915 CTCGAAGTCGACGAGATCGGGCCTTCCCTGCGCTACTCCACCGCGAAAGTGAACCG 13860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 227658451095008