Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq19563 443 3e-119 seq19464 176 6e-39 >seq19563 Length=274849 Score = 443 bits (490), Expect = 3e-119 Identities = 986/1472 (67%), Gaps = 12/1472 (1%) Strand=Plus/Plus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || |||||||| | | | ||| || || ||||| || |||||||| ||||| || ||| Sbjct 229904 GTGAACTGAATCGCTTGAGCTGCAGGCTTCGTACGCAGGTAGTACATTCCGGTCTTGAGA 229963 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || || |||| || ||||| ||||| |||| ||| |||| | | || |||| | Sbjct 229964 CCAAGTTTCCAGCCATAGAAGTGCATCGAGGTTAACTTGCCATAATTGGTTTCAGCTAGA 230023 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 || | ||| | |||||||| ||||||||||| ||||| | ||| || ||||| || || Sbjct 230024 TGGACATTTAGTGATTGACTCTGATCGATGAAGGCTCCACGATCAGCAGCCATCTTGATG 230083 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613 ||| | || || || || ||||| | || | | | || | | | ||||| | Sbjct 230084 ATATTTTTCTGTGGTATCTCCCATACGGTACGGTAGAGCAACTTAAGGTTTTTTGGAATG 230143 Query 68614 -CTCGTATTTTGAATGGATCCACCATCGGATATAATTATATTC-TTG---ATCTCATCAT 68668 | | | | || || | ||| || | | | |||| ||| ||| |||| Sbjct 230144 TCAAGCCTCTGGACTG-ACCCATTATAAGCAACCA----ATTCGTTGCGCATCGACTCAT 230198 Query 68669 TCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCC 68728 |||| | | | || |||| | || |||| ||||| |||| || | |||||| || | Sbjct 230199 TCCAAAGTCCTAATTCTGTTAGATCTTTAAGTAGATGATGATTGACCACTTGAAACTCAC 230258 Query 68729 CAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTC 68788 | |||||||||| ||| | ||| || || ||||||||||| | |||||||| || | Sbjct 230259 CTGATAACACTCGACGTGAGTACGCGTTGCTCGTATATGGTTCTATGGATTCATTGTTGC 230318 Query 68789 CCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 68848 | ||||| || || || |||||||| ||||||||||||| | | ||||| | | || Sbjct 230319 CAAGAATCTGGGCGGTCGATGCAGTGGGCATAGGTGCCAATAGGAGGCTATTGCGCACAC 230378 Query 68849 CATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACAT 68908 ||| | | || ||| ||||||| ||| ||||||||| | || || Sbjct 230379 CATATTTAGCAATCTTAGCTTTTAGCGCGGCCCAGTCCCAAAGAGAACTGGGAGTGACGC 230438 Query 68909 TCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAG 68968 ||| | ||| ||||| | || || ||| | || || || | || |||||||| | Sbjct 230439 CCCACATATCATATTGCAATATACCTTTAGATACAGGCGAACCCTCGTAAGTTTCATACG 230498 Query 68969 GTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGA 69028 |||||| | || | ||||| ||||| || || || ||||| || || || || | Sbjct 230499 TGCCTTCCACCTTCGCAATATCACAGCTTGCTTCCAAAGCGCCGTAGTAGATAGTCTCAA 230558 Query 69029 AAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAA 69088 | || || || || || |||||| |||| || || || || | || | || | Sbjct 230559 AGATTAGTTTGTTAAGTTCCATTGCTTCGGGACTGTCAAACGGTAAACGCAATATGATGA 230618 Query 69089 ATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTT 69148 | | || || | || || || ||||| || || |||| ||| | ||||| | | Sbjct 230619 AAGTGTCGGCAAGCCCTTGGACTCCAATTCCAATCGGTCGATGACGTTTATTGCTATGCT 230678 Query 69149 CAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTA 69208 | |||||||||| ||||| || |||| ||| ||||| || || || ||||| || | Sbjct 230679 CTGCTTCTGGAACTGGATAGTAGTTAACATCGATAATCTTGTTGAGGTTTCGTGTCACAA 230738 Query 69209 CTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATAACAAACATATTCA 69268 ||||| || || || ||||| ||| ||||| || || | ||||| ||| | Sbjct 230739 CTTTAGTAACCTCTTTGAGTTTTCCAAAGTCAAACTTGCCTTCATTGACAAAGCGATTGA 230798 Query 69269 GTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCT 69328 |||| | || || || || |||||||| | |||| || | | ||| | ||||| | Sbjct 230799 GTGCGAGTGACGCAAGGTTGCAAACTGCGATTTCATCAGGAGAGGAATACTCGATTATTT 230858 Query 69329 CTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTAC 69388 | ||||||| |||| || ||||| || || |||||||||||||| ||||||| ||||| Sbjct 230859 CCGTACATAAATTAGAGCACTTGATTGTTCCAAGATTTTGCTGATTGCTCTTTTGGTTAC 230918 Query 69389 AGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATT 69448 | || || || || | || | || || || |||||||| ||| ||||| ||| | | Sbjct 230919 AAGCATCTTTATATAAGATGTAAGGTGTGCCTGTTTCAATTTGACTTTCGAGAATGGCAT 230978 Query 69449 TCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATATTGTGTAT 69508 ||||| | || | || | | || | || ||| ||||||||| | Sbjct 230979 ACCAAAGTTTCTGGGCTTCTACCTGGCGCATGAAGCGGCCCTCGCGTTCATATTGCTCGT 231038 Query 69509 ATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACA 69568 | || |||||| || | ||||||| || || || ||||||| ||| | |||| Sbjct 231039 AGAGTTTTTCGAACTCCTTTCCCCAACAGTCGCTCAGCCCCGGACATTGATTGGAGCACA 231098 Query 69569 TCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAG 69628 |||| |||||| ||| |||| ||||| |||||| || || || | |||||| | Sbjct 231099 TCAAAGACCACTGGCCATTTTCCTCGACTCGACGCATAAACAGGTCAGGTACCCAAAG-G 231157 Query 69629 CTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGA 69687 | ||| || ||||| | | ||| | ||||||| | || ||||| || | |||||| Sbjct 231158 CCATAGAAAAGATCACGAGCTCTGTGTTCTTCAATACCAGTATTCTTGCGCAAATCGAGG 231217 Query 69688 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTA 69747 || || | ||||| | |||||||||||| | ||| ||||| | | ||||| | ||| Sbjct 231218 AATTCAAAGATATCGGCATGCCATGGTTCCAAATAGATCGCAAAAGCACCCGGCCTCTTA 231277 Query 69748 TTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATA 69807 || |||||||| || | |||| || |||||||| || || | ||||| || | ||| Sbjct 231278 TTACCTCCCTGGTCAACATATCGCGCTGTGTTATTGTACACACGAAGCATTGGCACAATG 231337 Query 69808 CCATTAGATTTACCATTTGTTCCAGAAATATA 69839 ||||| ||| | || || || || | ||||| Sbjct 231338 CCATTCGATGTTCCGTTAGTGCCTGCTATATA 231369 >seq19464 Length=44290 Score = 176 bits (194), Expect = 6e-39 Identities = 450/678 (66%), Gaps = 13/678 (2%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 |||||| ||| ||| |||||||||||||||||||| || || ||||| ||||||||||| Sbjct 12022 CATAACACCCGCTTTCTGGTATTCACCAACGCGTTTTTCAAAGAAATTCGTTTTGCCTTC 12081 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 | || || | ||||| || || |||||||| || | || || || | | Sbjct 12082 GAGGGAAATTTGCTCCATAAAGTCGAACGGATTCGTGGACTTCCATAGCTTCTGGCAGTT 12141 Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATT 39492 | || | || | ||| ||||| || || |||||| | ||||||| || || || Sbjct 12142 GAGCTCGATGAGCAGACGATCAGCAACGAACTCAATGTATCTCTTCATCAGATCGCAGTT 12201 Query 39493 CATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGC 39552 ||| || | | || |||| || || || ||||| |||| ||||||| | || || Sbjct 12202 CATACCCAACATAGCGACAGGTAATGCTTCAGTGAGAAATTCTTGTTCGATGGCAACAGC 12261 Query 39553 CTCTGTTATTATC-GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACA 39611 || | || || ||| | | | | || || ||| | | | ||||| |||| Sbjct 12262 GTCCTTAATGATTTGATAG-ATTCGCGCTTCGCTTGGTTTGTTGATCAGGTGTTTGAACA 12320 Query 39612 TTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATG 39671 | | ||||||||||| || | || || || | || | || || || | Sbjct 12321 TCAGACAGGCGAAGTCTGTGTGCATACCTTCGTCACGTGAGATGAGCTCATTGCTGAAGG 12380 Query 39672 TGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAA 39731 |||| |||||||| | ||| |||||||| ||||| || || || ||||| | || | Sbjct 12381 TGAGGCCAGGCATGATACCTCGCTTTTTCAGCCAGAAAATAGCGGCAAACGCCCCGCTGA 12440 Query 39732 AGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCAT--- 39788 | || |||||||| ||||| || ||||| |||| | ||| ||||| | || | Sbjct 12441 AAAAAATGCCTTCGACTGCAGCGAATGCCACAACACGCTCACCGTACGCAGCCTCCTCGT 12500 Query 39789 TATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAG 39848 || ||||||| ||||||||||| |||||||| | || |||||||| || || | Sbjct 12501 TAGCGATCCACTCTAAGGCCCAATCAGCCTTCTTCTTAATGCATGGCATTGTCTCAATTG 12560 Query 39849 CATTAAAGA---GATAATGTTTTTCAT-CACTATCTTTAACATATGTATCTATTAACAGA 39904 | |||| ||| | | || | | || || | | ||||| | || | ||| Sbjct 12561 CGCGGAAGAGTCGATCACG--TTCCGTGGAC--TCGGTGATGTATGTGTTTAGCAGAAGA 12616 Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 ||||||||||||||| || ||||| ||| |||||||| ||||| ||||| | || Sbjct 12617 GAATACATTTCTGAATGAATATTTTCCATCATTATCTGAAAACCGTAGAAACAACGCGCC 12676 Query 39965 TCAGTAATTTGTACCTCT 39982 || | | |||||| ||| Sbjct 12677 TCGGGCACTTGTACTTCT 12694 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 40003 ATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATA 40062 ||| || ||||| || |||||| ||| |||||||| || | | ||||| || || | Sbjct 13052 ATTCTCGTTCACAATGCCATCAGAAGCAGCAAAAAACGCAAGAATGTGTTTGATGAATTC 13111 Query 40063 TTTTTCATCGGGTGTCAAT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTC 40119 | || | ||| ||| | || ||||||||| || || || | ||| || || Sbjct 13112 TCGCTCCTGAGGTTTCATTCGGTTCTTCCAGTCAGACATGTCCTTGCCCAAATCGACCTC 13171 Query 40120 TTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTG 40179 ||||| |||||||| || |||| ||||||||||||||| | ||| || || ||||| Sbjct 13172 CTCAGCGGTCCAAAAAGAGGCCTGTGCCTTTTTGTACATTTGCCAAATGTCGGAATATTC 13231 Query 40180 TATTGGAAAAATAACAAATCTATTTGGATT 40209 || ||||||| ||||| | ||| || || Sbjct 13232 AATGGGAAAAAGCACAAAACGATTGGGGTT 13261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686733226110720