Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq19464 125 6e-24 >seq19464 Length=44290 Score = 125 bits (138), Expect = 6e-24 Identities = 460/704 (65%), Gaps = 21/704 (3%) Strand=Plus/Minus Query 43902 GTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTG 43961 || ||||| | |||||||| ||| | || || || || ||||| || || ||||| || Sbjct 12707 GTAGGTTTTCCCAAGAAGTACAAGTGCCCGAGGCGCGTTGTTTCTACGGTTTTCAGATAA 12648 Query 43962 CCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATG 44021 || |||||||||||||| |||||||| ||||||| || | || ||||||| || | Sbjct 12647 TGATGGAAAATATTCATTCAGAAATGTATTCTCTTCTGCTAAACACATACATCACCGA-G 12589 Query 44022 GGCACGAGAAGC-ATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAA 44079 |||| | | ||||| | || || || || ||| | || ||| ||||| | || Sbjct 12588 TCCACGGAACGTGATCGACTCTTCCGCGCAATTGAGACAATGCCATGC-ATTAAGAAGAA 12530 Query 44080 AGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT---TTTGGAGAACGACTTGT 44136 || || |||||| | | ||||| | | || || | || || || |||| Sbjct 12529 GGCTGATTGGGCCTTAGAGTGGATCGCTAACGAGGAGGCTGCGTACGGTGAGCGTGTTGT 12470 Query 44137 CGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG--GATCGTTTGCGGCCATATTTTGG 44194 || || || | || ||||||||||| |||||| | ||||||| || || || ||| Sbjct 12469 GGCATTCGCTGCAGTCGAAGGCATTTT--TTTCAGCGGGGCGTTTGCCGCTATTTTCTGG 12412 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | || || |||||| | |||||||| | || || |||||| | || ||||| Sbjct 12411 CTGAAAAAGCGAGGTATCATGCCTGGCCTCACCTTCAGCAATGAGCTCATCTCACGTGAC 12352 Query 44255 GAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCT 44314 ||||| | || || || || || || | | | | || || | | || || Sbjct 12351 GAAGGTATGCACACAGACTTCGCCTGTCTGATGTTCAAACACCT--GAT-CAACAAACCA 12295 Query 44315 TCATGTAAGAC--AATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTA 44372 | ||| ||| | || || || || || || |||||||||||| Sbjct 12294 --AGCGAAGCGCGAATCTATCAAATCATTAAGGACGCTGTTGCCATCGAACAAGAATTTC 12237 Query 44373 TGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATA 44432 | || |||||||||||| | | | || ||||| | ||||||| ||| | Sbjct 12236 TCACTGAAGCATTACCTGTCGCTATGTTGGGTATGAACTGCGATCTGATGAAGAGATACA 12177 Query 44433 TTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTAC 44492 |||| | | |||| |||||| | || | || || ||| | || | | | || | Sbjct 12176 TTGAGTTCGTTGCTGATCGTCTGCTCATCGAGCTCAACTGCCAGAAGCTATGGAA-GTCC 12118 Query 44493 AA-AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAA 44551 | || ||||| || |||||||| | ||||| | ||||||||||| || || |||||| Sbjct 12117 ACGAATCCGTTCGACTTTATGGAGCAAATTTCCCTCGAAGGCAAAACGAATTTCTTTGAA 12058 Query 44552 AAACGCGTTGGAGAATATCAGCGAATGGGCGTCAT-GATAACAA 44594 ||||||||||| ||||| ||| | ||| || || | |||||| Sbjct 12057 AAACGCGTTGGTGAATACCAGAAAGCGGGTGTTATGGCTAACAA 12014 Score = 86.0 bits (94), Expect = 5e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| | ||||| ||| ||||| ||||| ||||||||||||||||| |||||||| Sbjct 13249 TTTGTGCTTTTTCCCATTGAATATTCCGACATTTGGCAAATGTACAAAAAGGCACAGGCC 13190 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || |||||||| || || || || |||||| Sbjct 13189 TCTTTTTGGACCGCTGAGGAGGTCGATTTG 13160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397356949990240