Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq19464 125 6e-24
>seq19464
Length=44290
Score = 125 bits (138), Expect = 6e-24
Identities = 460/704 (65%), Gaps = 21/704 (3%)
Strand=Plus/Minus
Query 43902 GTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTG 43961
|| ||||| | |||||||| ||| | || || || || ||||| || || ||||| ||
Sbjct 12707 GTAGGTTTTCCCAAGAAGTACAAGTGCCCGAGGCGCGTTGTTTCTACGGTTTTCAGATAA 12648
Query 43962 CCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATG 44021
|| |||||||||||||| |||||||| ||||||| || | || ||||||| || |
Sbjct 12647 TGATGGAAAATATTCATTCAGAAATGTATTCTCTTCTGCTAAACACATACATCACCGA-G 12589
Query 44022 GGCACGAGAAGC-ATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAA 44079
|||| | | ||||| | || || || || ||| | || ||| ||||| | ||
Sbjct 12588 TCCACGGAACGTGATCGACTCTTCCGCGCAATTGAGACAATGCCATGC-ATTAAGAAGAA 12530
Query 44080 AGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT---TTTGGAGAACGACTTGT 44136
|| || |||||| | | ||||| | | || || | || || || ||||
Sbjct 12529 GGCTGATTGGGCCTTAGAGTGGATCGCTAACGAGGAGGCTGCGTACGGTGAGCGTGTTGT 12470
Query 44137 CGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG--GATCGTTTGCGGCCATATTTTGG 44194
|| || || | || ||||||||||| |||||| | ||||||| || || || |||
Sbjct 12469 GGCATTCGCTGCAGTCGAAGGCATTTT--TTTCAGCGGGGCGTTTGCCGCTATTTTCTGG 12412
Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254
| || || |||||| | |||||||| | || || |||||| | || |||||
Sbjct 12411 CTGAAAAAGCGAGGTATCATGCCTGGCCTCACCTTCAGCAATGAGCTCATCTCACGTGAC 12352
Query 44255 GAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCT 44314
||||| | || || || || || || | | | | || || | | || ||
Sbjct 12351 GAAGGTATGCACACAGACTTCGCCTGTCTGATGTTCAAACACCT--GAT-CAACAAACCA 12295
Query 44315 TCATGTAAGAC--AATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTA 44372
| ||| ||| | || || || || || || ||||||||||||
Sbjct 12294 --AGCGAAGCGCGAATCTATCAAATCATTAAGGACGCTGTTGCCATCGAACAAGAATTTC 12237
Query 44373 TGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATA 44432
| || |||||||||||| | | | || ||||| | ||||||| ||| |
Sbjct 12236 TCACTGAAGCATTACCTGTCGCTATGTTGGGTATGAACTGCGATCTGATGAAGAGATACA 12177
Query 44433 TTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTAC 44492
|||| | | |||| |||||| | || | || || ||| | || | | | || |
Sbjct 12176 TTGAGTTCGTTGCTGATCGTCTGCTCATCGAGCTCAACTGCCAGAAGCTATGGAA-GTCC 12118
Query 44493 AA-AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAA 44551
| || ||||| || |||||||| | ||||| | ||||||||||| || || ||||||
Sbjct 12117 ACGAATCCGTTCGACTTTATGGAGCAAATTTCCCTCGAAGGCAAAACGAATTTCTTTGAA 12058
Query 44552 AAACGCGTTGGAGAATATCAGCGAATGGGCGTCAT-GATAACAA 44594
||||||||||| ||||| ||| | ||| || || | ||||||
Sbjct 12057 AAACGCGTTGGTGAATACCAGAAAGCGGGTGTTATGGCTAACAA 12014
Score = 86.0 bits (94), Expect = 5e-12
Identities = 73/90 (81%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759
||||| | ||||| ||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct 13249 TTTGTGCTTTTTCCCATTGAATATTCCGACATTTGGCAAATGTACAAAAAGGCACAGGCC 13190
Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTG 43789
|| |||||||| || || || || ||||||
Sbjct 13189 TCTTTTTGGACCGCTGAGGAGGTCGATTTG 13160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397356949990240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |