Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq7231 122 7e-23 seq19980 91.5 1e-13 >seq7231 Length=219762 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||||||||| || | || | || | || || || || || |||||||| ||| Sbjct 93900 CCTCCGCGCAAACGGAGGACGAGGTGAAGAGTCGATTCCTTCTGTATATTGTAATCGGAG 93959 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| |||| || ||||| || || ||| |||| |||||||| ||||| || || Sbjct 93960 AGTGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGTGGA 94019 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| |||||||| |||||| | || | | | || | ||||| | | || || Sbjct 94020 ATACCTTCTTTATCCTGGATCTTTGTCTTGACGTTCTCGATCGTGTCCGATCCCTCTACG 94079 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||||| |||| ||| || || | |||||||||||||||||||| Sbjct 94080 TCTAGAGTGATAGTTTTCCCAGTTAATGTTTTCACAAAGATTTGCAT 94126 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | |||||| || | ||| | || || || ||||||||||| || || Sbjct 93670 TGCCACCGCGAAGCCGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTG 93729 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || ||||||| || || || || || | || ||||| || |||||||| | Sbjct 93730 AGAGGGTACGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAG 93789 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||||||||| ||| || |||| |||| | || || ||| ||||| Sbjct 93790 GGATGCCCTCTTTATCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAA 93849 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || || || | ||| || || || || ||||||||||| ||||| Sbjct 93850 CTTCAAGGGTGATGGTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || |||||||| ||||||||||| | | | || ||||||| || ||||||||| Sbjct 100466 GTGGACTCTTTTTGGATATTGTAGTCTGAAAGGGTACGACCGTCTTCAAGTTGTTTACCG 100525 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | | ||||||||| || || | ||| ||||| || ||| || ||| Sbjct 100526 GCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCTTTGTCTTGGATTTTCGCTTTA 100585 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | || |||||||| || || |||| || || || || ||| Sbjct 100586 ACATTCTCAATTGTGTCAGAGGGCTCAACTTCCAGGGTAATAGTCTTTCCGGTAAGGGTT 100645 Query 27231 TTCACAAAGATTTGCATAGCT 27251 ||||| ||||| |||||| || Sbjct 100646 TTCACGAAGATCTGCATACCT 100666 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || || || |||||||| | |||| |||| ||||| ||||| || || | Sbjct 92836 TCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACCGTCCTCGAGTTGTTTTCCAGCAAAG 92895 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 |||||||||||||| || ||||| | |||||||| || || || ||| | | | Sbjct 92896 ATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACGTTC 92955 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | ||||| | | |||||||| || ||||| | ||| ||||| || ||||||||| Sbjct 92956 TCAATGGTGTCGCTTGGCTCAACTTCAAGTGTTATTGTTTTTCCCGTAAGGGTTTTCACA 93015 Query 27237 AAGATTTGCAT 27247 || || ||||| Sbjct 93016 AAAATCTGCAT 93026 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | |||| ||||| || | || || ||||| ||||||||||| ||| | Sbjct 92157 CCTCCACGAAGGCGCAGCACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGAC 92216 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | || ||||| ||||| || ||| | || |||||||| ||||| || || Sbjct 92217 AGGGTACGTCCATCCTCGAGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGGG 92276 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| || || || | | |||| | || || | || ||||| Sbjct 92277 ATGCCTTCCTTATCCTGAATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAACC 92336 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| | ||| || |||| || || || || |||||||| Sbjct 92337 TCAAGGGTTATGGTTTTTCCGGTCAACGTCTTAACGAAAATTTGCAT 92383 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 || |||||||| | | | |||| ||| | ||||| ||||| ||||| || ||||| Sbjct 99977 TTTCCTCCGCGGAGTCTGAGCACCAGATGAAGAGTAGACTCTTTCTGAATGTTATAGTCA 100036 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 | | || | ||||||||||||||||| || |||| || | ||||||||| || Sbjct 100037 GATAGAGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGA 100096 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | || ||||| || || ||| || | | |||| | || || ||| ||| Sbjct 100097 GGGATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTTTCAATGGTATCACTGGATTCT 100156 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || |||| |||||| || || || ||||| || || ||||| Sbjct 100157 ACCTCGAGTGTGATAGTTTTGCCTGTGAGCGTCTTCACGAAAATCTGCAT 100206 >seq19980 Length=299602 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | | || |||| ||| | ||||| ||||||||||| ||||||||| Sbjct 145190 CCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAG 145131 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || ||||||||||| || ||| |||| | | |||||||| || || Sbjct 145130 AGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGA 145071 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || || ||| ||| | | | || | || || | | || ||| Sbjct 145070 ATTCCTTCCTTGTCTTGAATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGACT 145011 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | ||| || || || ||||| ||||| || |||||| Sbjct 145010 TCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCATA 144963 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||| | ||| | || || || ||||| ||||||||||| Sbjct 144734 CCTCCACGAAGTCGAAGTACAAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCTGAA 144675 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | ||||| || ||||||||||| | || || | ||| ||||| || || Sbjct 144674 AGAGTACGTCCATCTTCTAGTTGTTTACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGG 144615 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||||||| || ||| || || | | || | ||||| | | |||||| Sbjct 144614 ATACCCTCTTTGTCTTGGATTTTCGCCTTAACATTCTCAATTGTGTCAGAAGGTTCAACC 144555 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | ||| || || ||||| || |||||||| |||||| Sbjct 144554 TCCAGGGTGATGGTTTTCCCGGTGAGAGTCTTTACAAAGATCTGCATA 144507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424828502098176