Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq7304 241 4e-58 seq12141 201 4e-46 seq16755 131 5e-25 seq6637 98.7 3e-15 seq6319 93.3 1e-13 seq9373 87.8 6e-12 seq19464 86.0 2e-11 seq11319 86.0 2e-11 >seq7304 Length=836 Score = 241 bits (266), Expect = 4e-58 Identities = 192/243 (79%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 248482 ACAAAAA-ACCCAGAGACGATCGAATCGTGATTCACGACCGTTTCGACTCCGTGTTACAT 248540 ||||||| | || ||||| |||||||||||||||| ||||| ||||| |||||||||||| Sbjct 321 ACAAAAACAACCGGAGACAATCGAATCGTGATTCAAGACCGGTTCGATTCCGTGTTACAT 262 Query 248541 GAGTTGTCCAGACTTCCTATCCAAACAGTCCAAAAACAGTCGAATCGAGATTTTGGATGG 248600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 261 GAGTTGTCCAGACTTCCTATCCAAACAGTCCAAAAACAGTCGAATCGAGATTTTGGATGG 202 Query 248601 GAACTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGTAAACTGA 248660 ||||||| |||||||||| || Sbjct 201 GAACTGTCTCGGCGTTACATTGGTCGCCAAAACTTCCTCTCCATCCAAACTGTAAACCGA 142 Query 248661 GATAGGATCTAAATTGGTCGAACGAGATGTTATTCGAGTAACGAAAAATAGTTGAGATGA 248720 |||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 141 GATAAGATCTAAATTGGTCGAACGAGATGTTATTCGAGTAACGAAAAATGGTCGAGATGA 82 Query 248721 AAA 248723 ||| Sbjct 81 AAA 79 >seq12141 Length=459 Score = 201 bits (222), Expect = 4e-46 Identities = 117/121 (97%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 392027 CCGATCGCGTGGTCGTCTCGGTTGCATAAGCTTGCGCAAAAGACCGTCAGCAAGTATTCA 392086 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 339 CCGATCGCGTGGTCGTCTCGGTTGCATAAGCTTGCGCAAAAGACGGTCAGCAAGTATTCA 398 Query 392087 ACAAGTCTTTTGCAACTCGTTTATCTACGTTTCGTCTTCGCGTCGTTATTGTTTTGTTGG 392146 ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 399 ACAAGTCTTTTGCAACTCGTTTATCTATGTTTCGTCTTCATGTCGTTATTGTTTTGTTGG 458 Query 392147 T 392147 | Sbjct 459 T 459 >seq16755 Length=603 Score = 131 bits (144), Expect = 5e-25 Identities = 83/86 (97%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 456024 CGATGAACTGCTTCACAAATAACTCTCCCCTAGATACGATAGTTTGAGTTTGAAACCAAC 456083 |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct 1 CGATGAACTGCTTCACAAATAACTCT-CCCTAGATACGATAGTTTGAGTTTG-AACCAAC 58 Query 456084 TCCGTTTGATCAGTTTGACCAGTTGG 456109 |||| ||||||||||||||||||||| Sbjct 59 TCCG-TTGATCAGTTTGACCAGTTGG 83 >seq6637 Length=455 Score = 98.7 bits (108), Expect = 3e-15 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 358404 GGAGTGAACGCGGTGCAACAGGCGGTCCACTGCAGGCGCCGACACCACCGACCCTGGAGT 358463 || ||||||||||||||||||||| ||||||||||||| | ||||| ||||||||||||| Sbjct 237 GGCGTGAACGCGGTGCAACAGGCGATCCACTGCAGGCGTCCACACCGCCGACCCTGGAGT 296 Query 358464 GTAACAGCG 358472 ||| ||||| Sbjct 297 GTAGCAGCG 305 >seq6319 Length=1971 Score = 93.3 bits (102), Expect = 1e-13 Identities = 51/51 (100%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 254013 AAGAGAACCAACTACCCAGGATGTCCGCTTGTCCGCGTCTTACCAAGTTGG 254063 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51 AAGAGAACCAACTACCCAGGATGTCCGCTTGTCCGCGTCTTACCAAGTTGG 1 >seq9373 Length=410 Score = 87.8 bits (96), Expect = 6e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 358168 GTCGCCCGTCACCGCGCGTCACGCGGTCGCAGCAGTCACCACCAAAGTCAAACGGA 358223 |||||| |||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 64 GTCGCCTGTCACCGCGCGTCACGCGGTCGCAGCAGTCGCCGCCAAAGTCAAACGGA 119 >seq19464 Length=44290 Score = 86.0 bits (94), Expect = 2e-11 Identities = 115/159 (72%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 443706 GAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTC 443765 ||||| | || || || |||| |||||||| | || || ||||| || || ||| | Sbjct 12480 GAGCGTGTTGTGGCATTCGCTGCAGTCGAAGGCATTTTTTTCAGCGGG-GCGTTTGCCGC 12422 Query 443766 CATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGAT 443825 || |||||| |||||||||| || | |||| || || ||||| || || || || || Sbjct 12421 TATTTTCTGGCTGAAAAAGCGAGGTATCATGCCTGGCCTCACCTTCAGCAATGAGCTCAT 12362 Query 443826 CAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 | || ||||| ||| |||| |||||||||||||| Sbjct 12361 CTCACGTGACGAAGGTATGCACACAGACTTCGCCTGTCT 12323 >seq11319 Length=681 Score = 86.0 bits (94), Expect = 2e-11 Identities = 47/47 (100%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 275394 TCTCATGTATGCGTGTAACCAGAATGTAAAAAAGCAGACACTCGTGG 275440 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 635 TCTCATGTATGCGTGTAACCAGAATGTAAAAAAGCAGACACTCGTGG 681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587919871851360