Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq19295 86.0 8e-12 >seq19295 Length=205138 Score = 86.0 bits (94), Expect = 8e-12 Identities = 274/423 (65%), Gaps = 8/423 (2%) Strand=Plus/Plus Query 181626 CCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAAAG 181685 ||||| |||||||| || | || || || | | |||||| | | | |||| || ||| Sbjct 36567 CCCGTGCCGATACCTTCAGCACCGTTAACTAAGATCATTGGAATAATAGGCAGATAGAAG 36626 Query 181686 TCTGGTTCAATGGAGCGTCCA-TCATCGTCCAAG---TAGTTGAGGATCGGGTCATCCCG 181741 || |||||||| | || | ||| || ||| |||||||| | || |||||| Sbjct 36627 TCGGGTTCAAT----CTTCTGGTTATCATCAAAGAGATAGTTGAGCACGGGATCATCCGA 36682 Query 181742 AGGATCAAAGATCTTGCGAGCCTCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGA 181801 || | ||| | | || ||| | | ||||||||||| || ||||| | | | Sbjct 36683 AGTAGGAAATAGACTTCGTGCCAATGGGCTGAGTTTTGTGAAAATGTACCTGGGTGACGC 36742 Query 181802 AGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAAT 181861 || ||||| |||||| || || ||||| |||||||| |||| || ||||| || Sbjct 36743 AGAATCTTTGCCACCCTGCAGCCGAGTACCGAATTGACCGATGGGCTGCAGTAGGTTGAT 36802 Query 181862 GTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACACTTC 181921 ||| || || | | | |||||| || ||||| || | || ||| ||| Sbjct 36803 GTTATTACTGCCCACGAAATTTTGGGCCAAGTTGACGATTGTCATCATTAGCGACTGTTC 36862 Query 181922 ACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTC 181981 ||||||||| || || ||| | || || || || | || | ||| || || || | ||| Sbjct 36863 ACCGTGGTGATACGCCGACATTTCTGCTACGGATCCAGCAAGCTGGGCAACTTTGACTTC 36922 Query 181982 ATCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACC 182041 || |||| | | |||||| | ||| || || | ||| || || ||||| Sbjct 36923 TCGCTTATCGTTCCTCTTGAAGCAGGTGAACAATACCTTACGCTGTCCTGGTTTAAGACC 36982 Query 182042 ATC 182044 ||| Sbjct 36983 ATC 36985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627871475020800