Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq19295 123 3e-23
>seq19295
Length=205138
Score = 123 bits (136), Expect = 3e-23
Identities = 245/358 (68%), Gaps = 16/358 (4%)
Strand=Plus/Plus
Query 178885 CCCGTGCCGATGCCTTCGGTTCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 178944
||||||||||| ||||| | ||||| || | | |||||||| | |||| |||||||
Sbjct 36567 CCCGTGCCGATACCTTCAGCACCGTTAACTAAGATCATTGGAATAATAGGCAGATAGAAG 36626
Query 178945 TCTGGTTCAATCGCACGCCCGTCATCATCCAA---ATAATTGAGCACGGGGTCGTCCCTC 179001
|| ||||||||| | || |||||| || ||| ||||||||||| || |||
Sbjct 36627 TCGGGTTCAATCTTCTG---GTTATCATCAAAGAGATAGTTGAGCACGGGATCATCCGAA 36683
Query 179002 GGATCAAAGATTTTACGAGCATCCCTGG--TGAGTTTTGTGAAGATGTACCTCGTTTGAG 179059
| | ||| | | || || | ||| ||||||||||||| |||||||| | | |
Sbjct 36684 GTAGGAAATAGACTTCGTGC--CAATGGGCTGAGTTTTGTGAAAATGTACCTGG---GTG 36738
Query 179060 ACGC---ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGAT 179116
|||| ||||||||||||| || || || || |||||||| |||| || || |
Sbjct 36739 ACGCAGAATCTTTGCCACCCTGCAGCCGAGTACCGAATTGACCGATGGGCTGCAGTAGGT 36798
Query 179117 TGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGA 179176
|||| || || |||| | | | | |||||| ||||| || || | || ||
Sbjct 36799 TGATGTTATTACTGCCCACGAAATTTTGGGCCAAGTTGACGATTGTCATCATTAGCGACT 36858
Query 179177 CTTCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTT 179234
||||||||| || || |||||| | || || || || | || | ||| || || ||
Sbjct 36859 GTTCACCGTGGTGATACGCCGACATTTCTGCTACGGATCCAGCAAGCTGGGCAACTTT 36916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618277127962880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |