Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq19295 123 3e-23 >seq19295 Length=205138 Score = 123 bits (136), Expect = 3e-23 Identities = 245/358 (68%), Gaps = 16/358 (4%) Strand=Plus/Plus Query 178885 CCCGTGCCGATGCCTTCGGTTCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 178944 ||||||||||| ||||| | ||||| || | | |||||||| | |||| ||||||| Sbjct 36567 CCCGTGCCGATACCTTCAGCACCGTTAACTAAGATCATTGGAATAATAGGCAGATAGAAG 36626 Query 178945 TCTGGTTCAATCGCACGCCCGTCATCATCCAA---ATAATTGAGCACGGGGTCGTCCCTC 179001 || ||||||||| | || |||||| || ||| ||||||||||| || ||| Sbjct 36627 TCGGGTTCAATCTTCTG---GTTATCATCAAAGAGATAGTTGAGCACGGGATCATCCGAA 36683 Query 179002 GGATCAAAGATTTTACGAGCATCCCTGG--TGAGTTTTGTGAAGATGTACCTCGTTTGAG 179059 | | ||| | | || || | ||| ||||||||||||| |||||||| | | | Sbjct 36684 GTAGGAAATAGACTTCGTGC--CAATGGGCTGAGTTTTGTGAAAATGTACCTGG---GTG 36738 Query 179060 ACGC---ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGAT 179116 |||| ||||||||||||| || || || || |||||||| |||| || || | Sbjct 36739 ACGCAGAATCTTTGCCACCCTGCAGCCGAGTACCGAATTGACCGATGGGCTGCAGTAGGT 36798 Query 179117 TGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGA 179176 |||| || || |||| | | | | |||||| ||||| || || | || || Sbjct 36799 TGATGTTATTACTGCCCACGAAATTTTGGGCCAAGTTGACGATTGTCATCATTAGCGACT 36858 Query 179177 CTTCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTT 179234 ||||||||| || || |||||| | || || || || | || | ||| || || || Sbjct 36859 GTTCACCGTGGTGATACGCCGACATTTCTGCTACGGATCCAGCAAGCTGGGCAACTTT 36916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618277127962880