Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq19295 84.2 3e-11 >seq19295 Length=205138 Score = 84.2 bits (92), Expect = 3e-11 Identities = 275/424 (65%), Gaps = 10/424 (2%) Strand=Plus/Plus Query 168278 CCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAAG 168337 ||||| |||||||| || | |||||| || | | ||| || | | |||| |||||| Sbjct 36567 CCCGTGCCGATACCTTCAGCACCGTTAACTAAGATCATTGGAATAATAGGCAGATAGAAG 36626 Query 168338 TCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGGA 168397 || || ||||| | ||| ||| | ||||||||| | |||||||| | | Sbjct 36627 TCGGGTTCAATCTTCTGGTTATCATCAAAGAGATAGTTGAGCACGGGATCATCCGAAGTA 36686 Query 168398 TCAAAGATCTTTCGGGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACGCA 168457 ||| | |||| || | |||| ||||| || || ||||| | | |||||| Sbjct 36687 GGAAATAGACTTCGTGCCAATGGGCTGAGTTTTGTGAAAATGTACCTGGGT---GACGCA 36743 Query 168458 ---TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 168514 || || |||||| || || ||||| || ||||| |||| || || ||||| Sbjct 36744 GAATCTTTGCCACCCTGCAGCCGAGTACCGAATTGACCGATGGGCTGCAGTAGGTTGATG 36803 Query 168515 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACT--T 168572 || || |||| | | | | ||||| ||||| || |||| | || |||| | Sbjct 36804 TTATTACTGCCCACGAAATTTTGGGCCAAGTTGACGAT--TGTCATCATTAGCGACTGTT 36861 Query 168573 CACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCT 168632 |||||||||| ||||| | | ||||| || || | || | ||| || ||||| | | Sbjct 36862 CACCGTGGTGATACGCCGACATTTCTGCTACGGATCCAGCAAGCTGGGCAACTTTGACTT 36921 Query 168633 CATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGAC 168692 | ||| ||| | | |||||| | | ||| ||||| || || || || |||| Sbjct 36922 CTCGCTTATCGTTCCTCTTGAAGCAGGTGAACAATACCTTACGCTGTCCTGGTTTAAGAC 36981 Query 168693 CATC 168696 |||| Sbjct 36982 CATC 36985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583111718539520