Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq19563 98.7 1e-15 >seq19563 Length=274849 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 20630 TACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGC 20689 ||| | ||||||||||| || |||||||| | |||||| | ||||| || ||||| || Sbjct 230118 TACCGTACCGTATGGGAGATACCACAGAAAAATATCATCAAGATGGCTGCTGATCGTGGA 230059 Query 20690 GCCTACATCGACCAGTCCCAGTCGCTCAATGT-CTTCATGGAGAATCCGAGCCTGGCGAA 20748 |||| |||||| ||| || || || ||||| | || | ||| || | |||| || Sbjct 230058 GCCTTCATCGATCAGAGTCAATCACTAAATGTCCATCTAGCTGAAACCAATTATGGC-AA 230000 Query 20749 GCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCT 20808 | | | ||| ||||| | || |||||| | || |||||||| || |||||||| || Sbjct 229999 GTTAACCTCGATGCACTTCTATGGCTGGAAACTTGGTCTCAAGACCGGAATGTACTACCT 229940 Query 20809 GCGGAC 20814 ||| || Sbjct 229939 GCGTAC 229934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548384597061120