Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq19295 113 5e-20 seq20018 104 3e-17 seq19563 98.7 1e-15 >seq19295 Length=205138 Score = 113 bits (124), Expect = 5e-20 Identities = 187/268 (70%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||||||||| | | |||| ||| |||||||| || || ||||||||||| Sbjct 36720 GTGAAAATGTACCTGGGTGACGCAGAATCTTTGCCACCCTGCAGCCGAGTACCGAATTGA 36779 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | |||| || ||||| | ||| || |||||| || ||||| ||||||||||| Sbjct 36780 CCGATGGGCTGCAGTAGGTTGATGTTATTACTGCCCACGAAATTTTGGGCCAAGTTGACG 36839 Query 117425 ATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482 || || | || | | || ||||| ||||||||||||| | || || ||| | | Sbjct 36840 ATTGTCATCATTAGCGACT--GTTCACCGTGGTGATACGCCGACATTTCTGCTACGGATC 36897 Query 117483 CCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCA 117542 | || ||||| || || || | ||| | | |||| |||||| ||||| | | | Sbjct 36898 CAGCAAGCTGGGCAACTTTGACTTCTCGCTTATCGTTCCTCTTGAAGCAGGTGAACAATA 36957 Query 117543 CCTTGCGCTGACTTGGCTTCAGACCATC 117570 |||| ||||| | ||| || |||||||| Sbjct 36958 CCTTACGCTGTCCTGGTTTAAGACCATC 36985 Score = 93.3 bits (102), Expect = 5e-14 Identities = 272/419 (65%), Gaps = 0/419 (0%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || ||||| || || |||||||| || | ||||| || | |||||| || || Sbjct 36567 CCCGTGCCGATACCTTCAGCACCGTTAACTAAGATCATTGGAATAATAGGCAGATAGAAG 36626 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 || || || | || || ||||| | | || || | |||| || || | | | Sbjct 36627 TCGGGTTCAATCTTCTGGTTATCATCAAAGAGATAGTTGAGCACGGGATCATCCGAAGTA 36686 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 |||| | ||| | || || || | ||||| ||||| | || || | | Sbjct 36687 GGAAATAGACTTCGTGCCAATGGGCTGAGTTTTGTGAAAATGTACCTGGGTGACGCAGAA 36746 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 || |||||||| |||||| || || || || || ||||| || ||||||| ||| Sbjct 36747 TCTTTGCCACCCTGCAGCCGAGTACCGAATTGACCGATGGGCTGCAGTAGGTTGATGTTA 36806 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 || |||||||||||| || ||||| || || || || | || | ||||||| Sbjct 36807 TTACTGCCCACGAAATTTTGGGCCAAGTTGACGATTGTCATCATTAGCGACTGTTCACCG 36866 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTC 152235 ||||||||||||| | || || | | |||| || | ||| || || || | || | Sbjct 36867 TGGTGATACGCCGACATTTCTGCTACGGATCCAGCAAGCTGGGCAACTTTGACTTCTCGC 36926 Query 152236 GTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294 | |||| |||||| |||| | | | ||||| ||||| |||||| | ||| || Sbjct 36927 TTATCGTTCCTCTTGAAGCAGGTGAACAATACCTTACGCTGTCCTGGTTTAAGACCATC 36985 >seq20018 Length=208396 Score = 104 bits (114), Expect = 3e-17 Identities = 127/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391 || ||||| || |||||| ||||||||||| || | |||| | ||||| | |||| Sbjct 174571 TCTTTGCCGCCTTGAAGACGAGTACCGAATTGACCGATTGGCTGTAGAAGGTTGATGTTG 174630 Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT-ACCTTGGAGGCTCGCCTCACC 117450 || | ||| || || ||||||||||| |||| ||||| | | | || ||| ||||| Sbjct 174631 TTTGAGCCAACGAAATTTTGAGCCAAATTGATGATCGTCATCAT-CAGACTCTGTTCACC 174689 Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTT 117501 ||||||||| |||| | |||||| || | ||||| || ||||| ||||| Sbjct 174690 ATGGTGATAAGCCGACATCTCCGCGACAGAACCCGCTAGTTGAGCTACCTT 174740 Score = 96.9 bits (106), Expect = 4e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 152050 GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTG 152109 |||| || ||||| ||| || || || || || || || |||| || |||||| Sbjct 174565 GCCGAGTCTTTGCCGCCTTGAAGACGAGTACCGAATTGACCGATTGGCTGTAGAAGGTTG 174624 Query 152110 AGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT 152169 | |||||| | ||| |||||||| ||||||||||| | ||||| | ||||||| | Sbjct 174625 ATGTTGTTTGAGCCAACGAAATTTTGAGCCAAATTGATGATCGTCATCATCAGACTCTGT 174684 Query 152170 TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTT 152225 ||||| |||||||| |||| | |||||||| | ||||| | || || ||||| Sbjct 174685 TCACCATGGTGATAAGCCGACATCTCCGCGACAGAACCCGCTAGTTGAGCTACCTT 174740 >seq19563 Length=274849 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 55694 GGGTCCGTCCAGAATCTGGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGG 55753 ||||| ||||||| || || ||||| || ||| | | ||||| || || ||| Sbjct 230163 GGGTCAGTCCAGAGGCTTGACATTCCAAAAAACCTTAAGTTGCTCTACCGTACCGTATGG 230104 Query 55754 GAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAG 55813 ||||| |||||||| | | | || | ||| |||||||||||| || | |||||| ||| Sbjct 230103 GAGATACCACAGAAAAATATCATCAAGATGGCTGCTGATCGTGGAGCCTTCATCGATCAG 230044 Query 55814 TCCCAGTCTCTGAACAT-CTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCA 55872 || || || || | | || | ||| || ||| |||||| | ||||||||| Sbjct 230043 AGTCAATCACTAAATGTCCATCTAGCTGAAACCAATTATGG-CAAGTTAACCTCGATGCA 229985 Query 55873 CTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 ||| || || ||||| || |||||||| || |||||||| ||||| || Sbjct 229984 CTTCTATGGCTGGAAACTTGGTCTCAAGACCGGAATGTACTACCTGCGTAC 229934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547076131590400