Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq19295 113 5e-20
seq20018 104 3e-17
seq19563 98.7 1e-15
>seq19295
Length=205138
Score = 113 bits (124), Expect = 5e-20
Identities = 187/268 (70%), Gaps = 4/268 (1%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||||||||| | | |||| ||| |||||||| || || |||||||||||
Sbjct 36720 GTGAAAATGTACCTGGGTGACGCAGAATCTTTGCCACCCTGCAGCCGAGTACCGAATTGA 36779
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| | |||| || ||||| | ||| || |||||| || ||||| |||||||||||
Sbjct 36780 CCGATGGGCTGCAGTAGGTTGATGTTATTACTGCCCACGAAATTTTGGGCCAAGTTGACG 36839
Query 117425 ATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482
|| || | || | | || ||||| ||||||||||||| | || || ||| | |
Sbjct 36840 ATTGTCATCATTAGCGACT--GTTCACCGTGGTGATACGCCGACATTTCTGCTACGGATC 36897
Query 117483 CCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCA 117542
| || ||||| || || || | ||| | | |||| |||||| ||||| | | |
Sbjct 36898 CAGCAAGCTGGGCAACTTTGACTTCTCGCTTATCGTTCCTCTTGAAGCAGGTGAACAATA 36957
Query 117543 CCTTGCGCTGACTTGGCTTCAGACCATC 117570
|||| ||||| | ||| || ||||||||
Sbjct 36958 CCTTACGCTGTCCTGGTTTAAGACCATC 36985
Score = 93.3 bits (102), Expect = 5e-14
Identities = 272/419 (65%), Gaps = 0/419 (0%)
Strand=Plus/Plus
Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935
|| || ||||| || || |||||||| || | ||||| || | |||||| || ||
Sbjct 36567 CCCGTGCCGATACCTTCAGCACCGTTAACTAAGATCATTGGAATAATAGGCAGATAGAAG 36626
Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995
|| || || | || || ||||| | | || || | |||| || || | | |
Sbjct 36627 TCGGGTTCAATCTTCTGGTTATCATCAAAGAGATAGTTGAGCACGGGATCATCCGAAGTA 36686
Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055
|||| | ||| | || || || | ||||| ||||| | || || | |
Sbjct 36687 GGAAATAGACTTCGTGCCAATGGGCTGAGTTTTGTGAAAATGTACCTGGGTGACGCAGAA 36746
Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115
|| |||||||| |||||| || || || || || ||||| || ||||||| |||
Sbjct 36747 TCTTTGCCACCCTGCAGCCGAGTACCGAATTGACCGATGGGCTGCAGTAGGTTGATGTTA 36806
Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175
|| |||||||||||| || ||||| || || || || | || | |||||||
Sbjct 36807 TTACTGCCCACGAAATTTTGGGCCAAGTTGACGATTGTCATCATTAGCGACTGTTCACCG 36866
Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTC 152235
||||||||||||| | || || | | |||| || | ||| || || || | || |
Sbjct 36867 TGGTGATACGCCGACATTTCTGCTACGGATCCAGCAAGCTGGGCAACTTTGACTTCTCGC 36926
Query 152236 GTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294
| |||| |||||| |||| | | | ||||| ||||| |||||| | ||| ||
Sbjct 36927 TTATCGTTCCTCTTGAAGCAGGTGAACAATACCTTACGCTGTCCTGGTTTAAGACCATC 36985
>seq20018
Length=208396
Score = 104 bits (114), Expect = 3e-17
Identities = 127/171 (74%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391
|| ||||| || |||||| ||||||||||| || | |||| | ||||| | ||||
Sbjct 174571 TCTTTGCCGCCTTGAAGACGAGTACCGAATTGACCGATTGGCTGTAGAAGGTTGATGTTG 174630
Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT-ACCTTGGAGGCTCGCCTCACC 117450
|| | ||| || || ||||||||||| |||| ||||| | | | || ||| |||||
Sbjct 174631 TTTGAGCCAACGAAATTTTGAGCCAAATTGATGATCGTCATCAT-CAGACTCTGTTCACC 174689
Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTT 117501
||||||||| |||| | |||||| || | ||||| || ||||| |||||
Sbjct 174690 ATGGTGATAAGCCGACATCTCCGCGACAGAACCCGCTAGTTGAGCTACCTT 174740
Score = 96.9 bits (106), Expect = 4e-15
Identities = 127/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 152050 GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTG 152109
|||| || ||||| ||| || || || || || || || |||| || ||||||
Sbjct 174565 GCCGAGTCTTTGCCGCCTTGAAGACGAGTACCGAATTGACCGATTGGCTGTAGAAGGTTG 174624
Query 152110 AGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT 152169
| |||||| | ||| |||||||| ||||||||||| | ||||| | ||||||| |
Sbjct 174625 ATGTTGTTTGAGCCAACGAAATTTTGAGCCAAATTGATGATCGTCATCATCAGACTCTGT 174684
Query 152170 TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTT 152225
||||| |||||||| |||| | |||||||| | ||||| | || || |||||
Sbjct 174685 TCACCATGGTGATAAGCCGACATCTCCGCGACAGAACCCGCTAGTTGAGCTACCTT 174740
>seq19563
Length=274849
Score = 98.7 bits (108), Expect = 1e-15
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 55694 GGGTCCGTCCAGAATCTGGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGG 55753
||||| ||||||| || || ||||| || ||| | | ||||| || || |||
Sbjct 230163 GGGTCAGTCCAGAGGCTTGACATTCCAAAAAACCTTAAGTTGCTCTACCGTACCGTATGG 230104
Query 55754 GAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAG 55813
||||| |||||||| | | | || | ||| |||||||||||| || | |||||| |||
Sbjct 230103 GAGATACCACAGAAAAATATCATCAAGATGGCTGCTGATCGTGGAGCCTTCATCGATCAG 230044
Query 55814 TCCCAGTCTCTGAACAT-CTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCA 55872
|| || || || | | || | ||| || ||| |||||| | |||||||||
Sbjct 230043 AGTCAATCACTAAATGTCCATCTAGCTGAAACCAATTATGG-CAAGTTAACCTCGATGCA 229985
Query 55873 CTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923
||| || || ||||| || |||||||| || |||||||| ||||| ||
Sbjct 229984 CTTCTATGGCTGGAAACTTGGTCTCAAGACCGGAATGTACTACCTGCGTAC 229934
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547076131590400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |