Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq7231 138 7e-28 seq19980 116 2e-21 >seq7231 Length=219762 Score = 138 bits (152), Expect = 7e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | || | |||||| ||| ||| ||||| || || || |||||| Sbjct 100436 CCTCCACGAAGTCGAAGAACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTGAA 100495 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||||||||||||||||||||| || || | |||||| || || || Sbjct 100496 AGGGTACGACCGTCTTCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGG 100555 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| | |||||| | ||||||||| | ||| || Sbjct 100556 ATACCTTCTTTGTCTTGGAT-TTTCGCTTTAACATTCTCAATTGTGTCAGAGGGCTCAAC 100614 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || ||||| | |||||||| || |||||||| Sbjct 100615 TTCCAGGGTAATAGTCTTTCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662 Score = 136 bits (150), Expect = 2e-27 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | ||| | ||| | ||||| ||||| || ||||| || || || Sbjct 92800 CCGCCACGGAGACGGAGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGAT 92859 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || |||||||| || ||||| || | |||||||||||| ||||| Sbjct 92860 AGCGTGCGACCGTCCTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGTTGGTCAGGCGGA 92919 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT--CTTCGCTCTCC 34656 | ||||| |||||| ||| ||| | ||| ||| | ||| |||| ||| | ||| Sbjct 92920 ATGCCCTCTTTGTCT-TGAATTTTCGCTTTTACGTTCTCAATGGTGTCGCTTGG--CTCA 92976 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | ||||| ||||| || || | |||||||||||||||||||| Sbjct 92977 ACTTCAAGTGTTATTGTTTTTCCCGTAAGGGTTTTCACAAAAATCTGCAT 93026 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| ||||| || | ||| || || |||||||||||| ||||||||||| Sbjct 93671 GCCACCGCGAAGCCGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGA 93730 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || ||||||| ||||| || || ||||| || | ||| || || ||||| || Sbjct 93731 GAGGGTACGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGG 93790 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCA 34657 | ||||| || || ||| ||||| || || | |||||| || | || | Sbjct 93791 GATGCCCTCTTTATCCTGGAT-TTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAA 93849 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || ||||| || || | ||| |||||||| |||||||| Sbjct 93850 CTTCAAGGGTGATGGTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 93898 Score = 116 bits (128), Expect = 2e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 34483 CCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGT 34542 |||| || || | ||| | |||||||||||| ||||| |||||||||||||| ||| Sbjct 93219 CCTCGCAGGCGAAGCACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGG 93278 Query 34543 GTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACT 34602 || || | || || | ||||| || ||||| || ||||| || ||||| || || | Sbjct 93279 GTGCGGCCATCCTCCAACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATG 93338 Query 34603 CCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCC 34662 ||||| ||||| ||||||| ||| | | ||||||||| ||| ||||| Sbjct 93339 CCCTCTTTGTCCTGGATCTTTGCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTTCA 93398 Query 34663 ACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || ||||| || ||||| | || || ||||| |||||||| Sbjct 93399 AGCGTGATCGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 93442 Score = 116 bits (128), Expect = 2e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 |||||| ||| ||| ||||| || || || || ||||| || || ||||||| | || Sbjct 100687 ATGGAGCGTGGACTCTTTTTGGATATTGTAGTCCGAAAGAGTACGTCCGTCTTCCAACTG 100746 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 ||| || ||||| ||||| | ||||||||| || || | |||||||||||| ||||| Sbjct 100747 TTTTCCAGCAAAGATTAATCTCTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGAATCTT 100806 Query 34623 TTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || | | ||||| ||| ||||| || | ||| || || |||||||| Sbjct 100807 TGCCTTGACATTTTCGATTGTATCTGAAGATTCCACCTCAAGGGTGATAGTCTTACCGGT 100866 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 || |||||||| ||||||||||| Sbjct 100867 TAGGGTTTTCACGAAAATCTGCAT 100890 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||| | || | || ||||| ||| || ||||||||||| ||||| Sbjct 100208 CCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGAT 100267 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| |||||||||| || || || ||||| ||||| | || || || ||||| Sbjct 100268 AGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGCGGA 100327 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC-TTCGCTCTCCA 34657 | || ||||||||| ||| |||| |||||| | ||||| || | | | || | Sbjct 100328 ATACCTTCCTTGTCT-TGAATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGT-TCAA 100385 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || ||||| || ||||| | |||||| || || |||||||| Sbjct 100386 CCTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||| ||| ||||| ||| || ||||||||||| || || || || || | ||||| Sbjct 99997 CACCAGATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGATAGAGTACGACCATCTTC 100056 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 || |||||||| ||||| |||| | |||||| || || || | ||| || ||||| | Sbjct 100057 GAGCTGTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGAGGGATTCCTTCTTTGTC-CT 100115 Query 34617 GATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 || ||| | || ||| | ||| || || | || || || | || || |||| Sbjct 100116 GAATTTTGGCCTTGACGTTTTCAATGGTATCACTGGATTCTACCTCGAGTGTGATAGTTT 100175 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | ||| ||||| ||||||||||| Sbjct 100176 TGCCTGTGAGCGTCTTCACGAAAATCTGCAT 100206 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || || | |||||| || || ||||| |||||||||||||| || || Sbjct 93444 CCGCCACGGAGCCGAAGCACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTCACTG 93503 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | || || |||||||| ||||| || || | ||| || ||||| || || Sbjct 93504 AGTGTGCGACCATCCTCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGGAGGA 93563 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| ||| | || ||| | |||||| || | || || Sbjct 93564 ATACCCTCCTTGTCCTGGAT-TTTGGCCTTCACGTTTTCAATTGTATCGCTGGGTTCAAC 93622 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | || || || || || || | || || || || ||||||||| Sbjct 93623 CTCAAGTGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATG 93671 >seq19980 Length=299602 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | || | ||| |||||| ||||||||| || || || |||||| Sbjct 144734 CCTCCACGAAGTCGAAGTACAAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCTGAA 144675 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| ||||||||||||||||| |||| | ||| || || || || Sbjct 144674 AGAGTACGTCCATCTTCTAGTTGTTTACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGG 144615 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||| |||||| ||| ||| | ||||| | ||||||||| || || Sbjct 144614 ATACCCTCTTTGTCTTGGAT-TTTCGCCTTAACATTCTCAATTGTGTCAGAAGGTTCAAC 144556 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || ||||| ||||| | || || ||||| |||||||| Sbjct 144555 CTCCAGGGTGATGGTTTTCCCGGTGAGAGTCTTTACAAAGATCTGCAT 144508 Score = 116 bits (128), Expect = 2e-21 Identities = 170/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 34474 TCGTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAA 34533 || || || |||| || | || ||||| ||| || || ||| ||||||||||| || Sbjct 145196 TCATCACCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAG 145137 Query 34534 TCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCC 34593 || || || || || | || || || ||||| || || || || || | ||||| || Sbjct 145136 TCGGAGAGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCG 145077 Query 34594 GGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT--CTTCG 34650 || || | ||| ||||||||| ||| ||| | ||||||| | ||| || | ||| | Sbjct 145076 GGGGGAATTCCTTCCTTGTCT-TGAATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGG 145018 Query 34651 CTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| ||||| | || |||||||| ||||| | |||||| |||||||||||||| Sbjct 145017 --CTCGACTTCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||| || | || | ||||| ||| |||||||||||| || || || ||| Sbjct 144962 CCGCCACGAAGTCGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATATTGTAGTCCGAA 144903 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||| || || |||||||| || || | |||||| || || || Sbjct 144902 AGGGTGCGTCCATCTTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGTTGATCGGGGGGA 144843 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| ||| || | || ||| | |||||| || |||||| Sbjct 144842 ATTCCTTCCTTGTCT-TGAATCTTGGCCTTTACGTTCTCAATTGTATCAGAAGGCTCCAC 144784 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || || || | ||||| || ||||| ||||| Sbjct 144783 TTCCAAGGTGATGGTCTTCCCAGTAAGGGTTTTGACGAAAATTTGCAT 144736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314651166236384