Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_028778.1 Length=75626 Score E Sequences producing significant alignments: (Bits) Value seq19061 98.7 5e-16 >seq19061 Length=15585 Score = 98.7 bits (108), Expect = 5e-16 Identities = 193/282 (68%), Gaps = 5/282 (2%) Strand=Plus/Minus Query 55434 GGCAACCTCACCGCTGATCCGGAACTGAGGTTCTTGGACTCCGGCGTGGCGGTCGCTCAG 55493 |||||| | || || ||||| || ||| ||||| |||||| ||| ||||| | Sbjct 14185 GGCAACTTGACGGCCGATCCCGAGCTGCGGTTCACACCGACCGGCGCGGCCGTCGCGAAC 14126 Query 55494 TTCTCGGTGGCGTCTACTCCCCGCAAGTTCAACAAGCAGACGAACGAGTGGGAGGACGGC 55553 ||| | || ||||| || || || | ||| || ||||| ||||||||| |||||||| Sbjct 14125 TTCACCGTCGCGTCGACGCCTCGGACCTTCGACCGTCAGACCAACGAGTGGAAGGACGGC 14066 Query 55554 GAAACCGTGTTCCTCCG-TACGTCGGTGTGGCGCGAGCTTGCAGAGGGCGCGGCTGAGAA 55612 ||| | ||||| | || | | | | ||||||||| || ||| || ||| ||| Sbjct 14065 GAAGCGCTGTTCTTGCGCTGCAAC-ATCTGGCGCGAGGCCGCGGAGAACGTGGCCGAGTC 14007 Query 55613 CCTGCGTAAGGGTGACAACGTTGTCGTGATCGGCAACCTCAAGCAGCGCGCTTACGAGA- 55671 ||| | ||| | ||| |||||| ||||| |||||||||||| | ||||||| Sbjct 14006 GCTGACCAGGGGCGCGCGCGTCATCGTGACCGGCAGGCTCAAGCAGCGCTCGTACGAGAC 13947 Query 55672 --AGGACGGCCAGACTCGCACCGTCTTTGAGATTGACGGCGA 55711 || ||| ||| || |||||| | ||| | || | ||| Sbjct 13946 CCGCGAGGGCGAGAAGCGGACCGTCGTCGAGCTCGAAGTCGA 13905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 241818121483936