Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_028865.1 Length=76964 Score E Sequences producing significant alignments: (Bits) Value seq12436 84.2 1e-11 >seq12436 Length=461 Score = 84.2 bits (92), Expect = 1e-11 Identities = 134/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 4072 CCCGTGGAGAACAGCCTCTGGTACCCGCTCCTCATGGAGAACGGAAACCACAGGGGTCGG 4131 || ||||| |||| | ||||||| ||| | || |||||||| || || || |||||| Sbjct 259 CCAGTGGATAACACCTTCTGGTATCCGATGCTGATGGAGAATGGTGACTACTACGGTCGG 200 Query 4132 CAGCTGCTGCGCACCGCCTTCCAGCCCTGGTTCTTCAGCA-CCTTGATC-CATCTGTACC 4189 |||| || || | || || ||| | ||||||||||||| ||| || | | | | || Sbjct 199 AAGCTTCTTCGGCCGGCGTTTCAGTCTTGGTTCTTCAGCATTCTTCTTCACTTGTTTGCC 140 Query 4190 AGAACAAGTACTTCGAGCGGTTCGGCGAGCCGGTCCCCATTGGCCGGGCGCCTTACAACG 4249 || ||||| |||||| ||||| |||||||| || | || || || || | ||| Sbjct 139 --AATCGGTACTACGAGCGATTCGGTGAGCCGGTTCCGGTAGGACGCGCTCCGTTTGACG 82 Query 4250 ACAAGGTCA 4258 || || ||| Sbjct 81 ACGAGATCA 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 246098654466400