Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_028906.1
Length=75933
Score E
Sequences producing significant alignments: (Bits) Value
seq4655 435 1e-117
seq19061 185 4e-42
>seq4655
Length=4343
Score = 435 bits (482), Expect = 1e-117
Identities = 592/832 (71%), Gaps = 28/832 (3%)
Strand=Plus/Minus
Query 66452 CAGACCGTGGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGG 66511
||| || | | ||| || |||||||| || ||||| ||||||| ||| |||||||||||
Sbjct 3782 CAGCCCATCGCCGTGATCCCCACCGGGTCCATCGCGCTGGACGCCGCGCTGGGCATCGGC 3723
Query 66512 GGGTACCCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACT 66571
||| || | ||||||||| || || ||||||||||| || || || || ||| | |||
Sbjct 3722 GGGCTGCCCAAGGGCCGGGTCGTCGAGATCTACGGCCCGGAGTCCTCGGGCAAGACGACT 3663
Query 66572 CTGTGTCTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGAC 66631
| || ||||| || ||||| || ||| || || ||| ||||| | |||||||
Sbjct 3662 GTCGCGCTGCACGCCGTCGCCAACGCCCAGGCCGCGGGCGGCGTGGCCGCGTTCATCGAC 3603
Query 66632 GCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTC 66691
|| |||||| | |||||||| |||||||| ||| ||||| |||||| ||| ||||||
Sbjct 3602 GCGGAGCACGCGCTGGACCCGGAGTACGCGAAGAACCTCGGGGTGGACACCGAGAACCTC 3543
Query 66692 GTGGTGGTTCAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAG 66751
| || ||||| || |||||||||||||| ||||||||| ||| | || ||
Sbjct 3542 CTCGTCTCCCAGCCGGACACCGGCGAGCAGGCTTTGGAGATCGCGGACATGCTGATCCGC 3483
Query 66752 TCTGGCGAGCTGTCCATCGTCGTCGTTGACTCCGTGGCGGCCCTGGT------------- 66798
|| |||| ||| | || ||||| | ||||| ||||||||||| ||
Sbjct 3482 TCGGGCGCGCTCGACGTCATCGTCATCGACTCGGTGGCGGCCCTCGTNNNNNNNNNNNNN 3423
Query 66799 ------------GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCT 66846
|||| |||||| |||||||||| || |||||||| |||||||||||
Sbjct 3422 NNNNNNNCTCGTGCCGAAGGCCGAGATCGAAGGCGAGATGGGGGACAGCCACGTCGGCCT 3363
Query 66847 GCACGCGCGCCTCATGTCACAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAA 66906
||| || || |||||| ||||| |||| ||| | || || || | || | ||
Sbjct 3362 GCAGGCCCGGCTCATGAGCCAGGCGCTGCGGAAGATGACCGGAGCCTTGAACAACTCCGG 3303
Query 66907 CACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCC 66966
|||| | || ||| |||||||| ||||||||||||||||| ||| | ||||||
Sbjct 3302 CACGACGGCGATCTTCATCAACCAGCTGCGCGAGAAGATCGGC---GTGATGTTCGGCCC 3246
Query 66967 GAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGTATGGATGT 67026
|| ||||||||||| ||||| ||||| ||| ||||||||||| || ||| |||| ||
Sbjct 3245 GACCGAGACCACCACAGGCGGCAAGGCCCTGAAATTCTACGCCTCGGTGCGTTTGGACGT 3186
Query 67027 CCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAA 67086
|| || |||| ||| ||||| ||| || || || | ||||||||||| |||||
Sbjct 3185 GCGCCGGATCGAGACCCTCAAGGACGGCTCCGAAGCGGTGGCGAACCGCACCCGCGTGAA 3126
Query 67087 GGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAATGCCGAGTTCTCCGTCGTGTACGG 67146
| |||||||||||||| | ||||||||| | | || |||||| | || | |||||
Sbjct 3125 GATCGTCAAGAACAAGGTCGCCCCGCCGTTCAAACAGGCGGAGTTCGACATCATCTACGG 3066
Query 67147 GGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAA 67206
|||||| || |||| | ||| ||||||| | |||| ||| ||| | |||
Sbjct 3065 CTCCGGCATCAGCCGCGAGGGCTCGCTCATCGACCTCGGCGTGGAGCACGGCATCGTGCG 3006
Query 67207 GAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGCCCAGGGCAAG 67258
||||| || ||||||| || ||||| || | | ||| ||||||||||
Sbjct 3005 CAAGTCCGGGGCCTGGTACACCTACGGCGATGAACAGCTCGGCCAGGGCAAG 2954
>seq19061
Length=15585
Score = 185 bits (204), Expect = 4e-42
Identities = 229/308 (74%), Gaps = 9/308 (3%)
Strand=Plus/Minus
Query 60220 GTCGGCACGCTGACCGCCGACCCCGAGCTGCGGTTCAC-CCAAGGTGGGCAGGCCGTCGC 60278
||||||| |||| ||||| ||||||||||||||||| || | | || |||||||||
Sbjct 14188 GTCGGCAACTTGACGGCCGATCCCGAGCTGCGGTTCACACCGACCGGCGC-GGCCGTCGC 14130
Query 60279 CAACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGA 60335
||||||||||||| ||| | || | |||| ||| |||| ||| ||
Sbjct 14129 GAACTTCACCGTCGCGTCGACGCCTCGGACCTTCGACCGTCAGACCAACGAGTGGAAGGA 14070
Query 60336 CGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTGGCGGA 60395
|||||| || ||| | ||||||| |||||||||||| ||||| ||||||||||| ||
Sbjct 14069 CGGCGAAGCGCTGTTCTTGCGCTGCAACATCTGGCGCGAGGCCGCGGAGAACGTGGCCGA 14010
Query 60396 AAGCCT--CCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTC 60453
|| |||| ||| ||||||||||||| ||| |||||||||||||| | |
Sbjct 14009 GTCGCTGACCAGG--GGCGCGCGCGTCATCGTGACCGGCAGGCTCAAGCAGCGCTCGTAC 13952
Query 60454 GAGACCAAGGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCG 60513
|||||| |||||||| ||||| |||||| ||||| | || || ||||||||||| ||
Sbjct 13951 GAGACCCGCGAGGGCGAGAAGCGGACCGTCGTCGAGCTCGAAGTCGACGAGATCGGGCCT 13892
Query 60514 TCGCTGCG 60521
|| |||||
Sbjct 13891 TCCCTGCG 13884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 242800276660032
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