Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq4655 435 1e-117 seq19061 185 4e-42 >seq4655 Length=4343 Score = 435 bits (482), Expect = 1e-117 Identities = 592/832 (71%), Gaps = 28/832 (3%) Strand=Plus/Minus Query 66452 CAGACCGTGGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGG 66511 ||| || | | ||| || |||||||| || ||||| ||||||| ||| ||||||||||| Sbjct 3782 CAGCCCATCGCCGTGATCCCCACCGGGTCCATCGCGCTGGACGCCGCGCTGGGCATCGGC 3723 Query 66512 GGGTACCCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACT 66571 ||| || | ||||||||| || || ||||||||||| || || || || ||| | ||| Sbjct 3722 GGGCTGCCCAAGGGCCGGGTCGTCGAGATCTACGGCCCGGAGTCCTCGGGCAAGACGACT 3663 Query 66572 CTGTGTCTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGAC 66631 | || ||||| || ||||| || ||| || || ||| ||||| | ||||||| Sbjct 3662 GTCGCGCTGCACGCCGTCGCCAACGCCCAGGCCGCGGGCGGCGTGGCCGCGTTCATCGAC 3603 Query 66632 GCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTC 66691 || |||||| | |||||||| |||||||| ||| ||||| |||||| ||| |||||| Sbjct 3602 GCGGAGCACGCGCTGGACCCGGAGTACGCGAAGAACCTCGGGGTGGACACCGAGAACCTC 3543 Query 66692 GTGGTGGTTCAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAG 66751 | || ||||| || |||||||||||||| ||||||||| ||| | || || Sbjct 3542 CTCGTCTCCCAGCCGGACACCGGCGAGCAGGCTTTGGAGATCGCGGACATGCTGATCCGC 3483 Query 66752 TCTGGCGAGCTGTCCATCGTCGTCGTTGACTCCGTGGCGGCCCTGGT------------- 66798 || |||| ||| | || ||||| | ||||| ||||||||||| || Sbjct 3482 TCGGGCGCGCTCGACGTCATCGTCATCGACTCGGTGGCGGCCCTCGTNNNNNNNNNNNNN 3423 Query 66799 ------------GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCT 66846 |||| |||||| |||||||||| || |||||||| ||||||||||| Sbjct 3422 NNNNNNNCTCGTGCCGAAGGCCGAGATCGAAGGCGAGATGGGGGACAGCCACGTCGGCCT 3363 Query 66847 GCACGCGCGCCTCATGTCACAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAA 66906 ||| || || |||||| ||||| |||| ||| | || || || | || | || Sbjct 3362 GCAGGCCCGGCTCATGAGCCAGGCGCTGCGGAAGATGACCGGAGCCTTGAACAACTCCGG 3303 Query 66907 CACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCC 66966 |||| | || ||| |||||||| ||||||||||||||||| ||| | |||||| Sbjct 3302 CACGACGGCGATCTTCATCAACCAGCTGCGCGAGAAGATCGGC---GTGATGTTCGGCCC 3246 Query 66967 GAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGTATGGATGT 67026 || ||||||||||| ||||| ||||| ||| ||||||||||| || ||| |||| || Sbjct 3245 GACCGAGACCACCACAGGCGGCAAGGCCCTGAAATTCTACGCCTCGGTGCGTTTGGACGT 3186 Query 67027 CCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAA 67086 || || |||| ||| ||||| ||| || || || | ||||||||||| ||||| Sbjct 3185 GCGCCGGATCGAGACCCTCAAGGACGGCTCCGAAGCGGTGGCGAACCGCACCCGCGTGAA 3126 Query 67087 GGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAATGCCGAGTTCTCCGTCGTGTACGG 67146 | |||||||||||||| | ||||||||| | | || |||||| | || | ||||| Sbjct 3125 GATCGTCAAGAACAAGGTCGCCCCGCCGTTCAAACAGGCGGAGTTCGACATCATCTACGG 3066 Query 67147 GGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAA 67206 |||||| || |||| | ||| ||||||| | |||| ||| ||| | ||| Sbjct 3065 CTCCGGCATCAGCCGCGAGGGCTCGCTCATCGACCTCGGCGTGGAGCACGGCATCGTGCG 3006 Query 67207 GAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGCCCAGGGCAAG 67258 ||||| || ||||||| || ||||| || | | ||| |||||||||| Sbjct 3005 CAAGTCCGGGGCCTGGTACACCTACGGCGATGAACAGCTCGGCCAGGGCAAG 2954 >seq19061 Length=15585 Score = 185 bits (204), Expect = 4e-42 Identities = 229/308 (74%), Gaps = 9/308 (3%) Strand=Plus/Minus Query 60220 GTCGGCACGCTGACCGCCGACCCCGAGCTGCGGTTCAC-CCAAGGTGGGCAGGCCGTCGC 60278 ||||||| |||| ||||| ||||||||||||||||| || | | || ||||||||| Sbjct 14188 GTCGGCAACTTGACGGCCGATCCCGAGCTGCGGTTCACACCGACCGGCGC-GGCCGTCGC 14130 Query 60279 CAACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGA 60335 ||||||||||||| ||| | || | |||| ||| |||| ||| || Sbjct 14129 GAACTTCACCGTCGCGTCGACGCCTCGGACCTTCGACCGTCAGACCAACGAGTGGAAGGA 14070 Query 60336 CGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTGGCGGA 60395 |||||| || ||| | ||||||| |||||||||||| ||||| ||||||||||| || Sbjct 14069 CGGCGAAGCGCTGTTCTTGCGCTGCAACATCTGGCGCGAGGCCGCGGAGAACGTGGCCGA 14010 Query 60396 AAGCCT--CCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTC 60453 || |||| ||| ||||||||||||| ||| |||||||||||||| | | Sbjct 14009 GTCGCTGACCAGG--GGCGCGCGCGTCATCGTGACCGGCAGGCTCAAGCAGCGCTCGTAC 13952 Query 60454 GAGACCAAGGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCG 60513 |||||| |||||||| ||||| |||||| ||||| | || || ||||||||||| || Sbjct 13951 GAGACCCGCGAGGGCGAGAAGCGGACCGTCGTCGAGCTCGAAGTCGACGAGATCGGGCCT 13892 Query 60514 TCGCTGCG 60521 || ||||| Sbjct 13891 TCCCTGCG 13884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242800276660032