Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_028966.1
Length=76269
Score E
Sequences producing significant alignments: (Bits) Value
seq12436 102 4e-17
>seq12436
Length=461
Score = 102 bits (112), Expect = 4e-17
Identities = 228/340 (67%), Gaps = 12/340 (4%)
Strand=Plus/Minus
Query 4013 CTGAACAAGATCAAGGACCTCGTTCCCGAGGAATGCGAGGTTAGCTGGAAGTATGTCGAC 4072
||||| ||||| || ||||| ||||| ||||| ||| |||| ||||||| | || |||
Sbjct 403 CTGAAGAAGATGAAAGACCTTGTTCCGGAGGAGTGCTCGGTTCACTGGAAGAAGGTTGAC 344
Query 4073 ---TCGGCGATGAAGACCGGCACCCAGCAGGTGTCTGCCCCGAAGATTCCGATCTTCGAC 4129
| |||| |||| || || | || || |||||||| |||| |||
Sbjct 343 GGCTGGGCGCCT----CCGGGACACAAGA----TCAAGCCA-AAGATTCCTATCTACGAT 293
Query 4130 GGAATCCAGCGGCGGGGGACCAACTACAAGGTTCCCGTGGAGAACAGCCTCTGGTACCCG 4189
|||||| || | || | | | |||| ||||| |||| | ||||||| |||
Sbjct 292 GGAATCAAGATTCTTGGTTCAGCTTGGCCGATTCCAGTGGATAACACCTTCTGGTATCCG 233
Query 4190 CTCCTCATGGAGAACGGCAACCATCGAGGGCGTCAGCTTCTTCGAACCGCCTTCCAGCCC 4249
| || |||||||| || || | || || |||||||||| | || || ||| |
Sbjct 232 ATGCTGATGGAGAATGGTGACTACTACGGTCGGAAGCTTCTTCGGCCGGCGTTTCAGTCT 173
Query 4250 TGGTTCTTCAGCACGCTGATTCACCTGTACCAGAACAAGTACTTCGAGCGGTTCGGCGAG 4309
||||||||||||| || ||||| ||| || ||||| |||||| ||||| |||
Sbjct 172 TGGTTCTTCAGCATTCTTCTTCACTTGTTTGCCAATCGGTACTACGAGCGATTCGGTGAG 113
Query 4310 CCGGTCCCCATTGGTCGGGCGCCTTACAACGACAAGGTCA 4349
||||| || | || || || || | ||||| || |||
Sbjct 112 CCGGTTCCGGTAGGACGCGCTCCGTTTGACGACGAGATCA 73
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 243875208709440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |