Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_028966.1 Length=76269 Score E Sequences producing significant alignments: (Bits) Value seq12436 102 4e-17 >seq12436 Length=461 Score = 102 bits (112), Expect = 4e-17 Identities = 228/340 (67%), Gaps = 12/340 (4%) Strand=Plus/Minus Query 4013 CTGAACAAGATCAAGGACCTCGTTCCCGAGGAATGCGAGGTTAGCTGGAAGTATGTCGAC 4072 ||||| ||||| || ||||| ||||| ||||| ||| |||| ||||||| | || ||| Sbjct 403 CTGAAGAAGATGAAAGACCTTGTTCCGGAGGAGTGCTCGGTTCACTGGAAGAAGGTTGAC 344 Query 4073 ---TCGGCGATGAAGACCGGCACCCAGCAGGTGTCTGCCCCGAAGATTCCGATCTTCGAC 4129 | |||| |||| || || | || || |||||||| |||| ||| Sbjct 343 GGCTGGGCGCCT----CCGGGACACAAGA----TCAAGCCA-AAGATTCCTATCTACGAT 293 Query 4130 GGAATCCAGCGGCGGGGGACCAACTACAAGGTTCCCGTGGAGAACAGCCTCTGGTACCCG 4189 |||||| || | || | | | |||| ||||| |||| | ||||||| ||| Sbjct 292 GGAATCAAGATTCTTGGTTCAGCTTGGCCGATTCCAGTGGATAACACCTTCTGGTATCCG 233 Query 4190 CTCCTCATGGAGAACGGCAACCATCGAGGGCGTCAGCTTCTTCGAACCGCCTTCCAGCCC 4249 | || |||||||| || || | || || |||||||||| | || || ||| | Sbjct 232 ATGCTGATGGAGAATGGTGACTACTACGGTCGGAAGCTTCTTCGGCCGGCGTTTCAGTCT 173 Query 4250 TGGTTCTTCAGCACGCTGATTCACCTGTACCAGAACAAGTACTTCGAGCGGTTCGGCGAG 4309 ||||||||||||| || ||||| ||| || ||||| |||||| ||||| ||| Sbjct 172 TGGTTCTTCAGCATTCTTCTTCACTTGTTTGCCAATCGGTACTACGAGCGATTCGGTGAG 113 Query 4310 CCGGTCCCCATTGGTCGGGCGCCTTACAACGACAAGGTCA 4349 ||||| || | || || || || | ||||| || ||| Sbjct 112 CCGGTTCCGGTAGGACGCGCTCCGTTTGACGACGAGATCA 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243875208709440