Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_028972.1 Length=75167 Score E Sequences producing significant alignments: (Bits) Value seq12436 134 7e-27 >seq12436 Length=461 Score = 134 bits (148), Expect = 7e-27 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 5933 ATTCCGGTTGGAAACTCGTTCTGGTACCCCATGCTTATGGAGTATGGTGACTACTACGGC 5992 ||||| || | ||| | |||||||| || ||||| |||||| |||||||||||||||| Sbjct 262 ATTCCAGTGGATAACACCTTCTGGTATCCGATGCTGATGGAGAATGGTGACTACTACGGT 203 Query 5993 AAGAAGCTGCTTAATACCGCTTACCAGCCGTGGTTTTTCTCCCTGCTTATTCACATGTAC 6052 |||||| ||| | || | ||| | ||||| ||| | | ||| ||||| ||| Sbjct 202 CGGAAGCTTCTTCGGCCGGCGTTTCAGTCTTGGTTCTTCAGCATTCTTCTTCACTTGTTT 143 Query 6053 TCGAATCGCTACTTCGAGCGATTTGGTGAGCCGGTTCCGGTTGCTCGCGCGCCATACGAC 6112 | ||||| |||| ||||||||| ||||||||||||||||| | ||||| || | ||| Sbjct 142 GCCAATCGGTACTACGAGCGATTCGGTGAGCCGGTTCCGGTAGGACGCGCTCCGTTTGAC 83 Query 6113 GAGGAAATCGACGTCAACGGCAAGCCCGTTAAGGGCCAT 6151 || || ||| | || ||| ||| || |||||| || Sbjct 82 GACGAGATCATTCTGGACAGCACGCCGGTCAAGGGCAAT 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240349687523584