Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_029074.1 Length=75987 Score E Sequences producing significant alignments: (Bits) Value seq12436 131 8e-26 >seq12436 Length=461 Score = 131 bits (144), Expect = 8e-26 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 5840 ATTCCGGTCGGAAACTCGTTCTGGTATCCCATGCTTATGGAGTATGGCGACTACTACGGC 5899 ||||| || | ||| | ||||||||||| ||||| |||||| |||| ||||||||||| Sbjct 262 ATTCCAGTGGATAACACCTTCTGGTATCCGATGCTGATGGAGAATGGTGACTACTACGGT 203 Query 5900 AAGAAGCTGCTTAATACTGCCTACCAGCCGTGGTTTTTCTCCCTGCTTATTCACATGTAC 5959 |||||| ||| | || | ||| | ||||| ||| | | ||| ||||| ||| Sbjct 202 CGGAAGCTTCTTCGGCCGGCGTTTCAGTCTTGGTTCTTCAGCATTCTTCTTCACTTGTTT 143 Query 5960 TCGAATCGCTACTTCGAGCGATTTGGTGAGCCGGTTCCGGTTGCTCGCGCACCTTACGAC 6019 | ||||| |||| ||||||||| ||||||||||||||||| | ||||| || | ||| Sbjct 142 GCCAATCGGTACTACGAGCGATTCGGTGAGCCGGTTCCGGTAGGACGCGCTCCGTTTGAC 83 Query 6020 GAGGAAATTGACGTTAACGGCAAGCCCGTCAAGGG 6054 || || || | || ||| ||| |||||||| Sbjct 82 GACGAGATCATTCTGGACAGCACGCCGGTCAAGGG 48 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242973033596544