Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq7231 102 6e-17 >seq7231 Length=219762 Score = 102 bits (112), Expect = 6e-17 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGA---AAG 27845 |||||| |||||||||||||| ||||| || ||| || ||| |||| || || ||| Sbjct 93027 AATGCAGATTTTTGTGAAAACCCTTACGGGAAAAACAATAACACTTGAAGTTGAGCCAAG 92968 Query 27846 CACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 | | || || | || || ||| ||||| |||||||| || ||||| || Sbjct 92967 CGAC-ACCATTGAGAAC--GTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCGCCTGA 92911 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 || || || | || ||||| ||||||||| | || |||| |||| | || || || Sbjct 92910 CCAACAGCGTCTCATCTTTGCTGGAAAACAACTCGAGGACGGTCGCACGCTATCGGACTA 92851 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||| || || ||||| |||||| | || | ||| | |||||||| Sbjct 92850 CAACATCCAGAAGGAAAGCACCTTGCATCTCGTGCTCCGTCTCCGTGGCGG 92800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355773715531296