Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq7231 167 5e-36
seq19980 163 7e-35
>seq7231
Length=219762
Score = 167 bits (184), Expect = 5e-36
Identities = 172/224 (77%), Gaps = 6/224 (3%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||| | ||| || ||||| ||||| |||||||| || |||||||| || | || ||
Sbjct 100214 CGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGATAGCGTT 100273
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| || ||||| ||||||||||| || ||||| | | ||| || || || |||| |||
Sbjct 100274 CGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGCGGAATACCT 100333
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCG 211070
|||||||| || |||||| || ||||||||||| || || ||| |||||||||
Sbjct 100334 TCCTTGTCTTGAATCTTTGCCTTAACGTTTTCGATTGTATC---GCTAGGTTCAACCTCT 100390
Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||||||||||||||| || || || ||||| || | ||||||
Sbjct 100391 AGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434
Score = 159 bits (176), Expect = 8e-34
Identities = 163/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| ||||| || |||||| || || || ||||||||||| |||||| | |||||
Sbjct 93231 AGCACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGGGTGCGGCCATCC 93290
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||| ||| || || || || || | ||||| ||||||||||||| || || ||||||
Sbjct 93291 TCCAACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCTTTGTCC 93350
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||||||| ||| || ||||| || ||||| || || || || || |||||||||
Sbjct 93351 TGGATCTTTGCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTTCAAGCGTGATCGTC 93410
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|| || ||||||||||| ||||| | |||||||
Sbjct 93411 TTGCCGGTGAGAGTCTTGACAAAGATCTGCATT 93443
Score = 158 bits (174), Expect = 3e-33
Identities = 168/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
|||||||| || ||||| || || ||||||||||||||||| || || |||| ||| ||
Sbjct 100670 CGAAGTCTAAGTACAAGATGGAGCGTGGACTCTTTTTGGATATTGTAGTCCGAAAGAGTA 100729
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| ||| ||||||| ||| || || || ||||| | | |||||||| || |||| ||
Sbjct 100730 CGTCCGTCTTCCAACTGTTTTCCAGCAAAGATTAATCTCTGTTGGTCTGGGGGAATACCC 100789
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
|||||||| || |||||| || || |||||||| || || || ||| ||||| ||
Sbjct 100790 TCCTTGTCTTGAATCTTTGCCTTGACATTTTCGATTGTATCTGAAGATTCCACCTCAAGG 100849
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
||||| ||||| || || || || || || || | |||||||
Sbjct 100850 GTGATAGTCTTACCGGTTAGGGTTTTCACGAAAATCTGCATT 100891
Score = 140 bits (154), Expect = 8e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | |||||| ||| || ||||| ||||| || || || || | |||||
Sbjct 93459 AGCACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTCACTGAGTGTGCGACCATCC 93518
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || || || || ||||| || || ||||| ||||||||||||| || |||||||||
Sbjct 93519 TCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTGTCC 93578
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || ||||||||||| || || || | ||||||||| || ||||| |||
Sbjct 93579 TGGATTTTGGCCTTCACGTTTTCAATTGTATCGCTGGGTTCAACCTCAAGTGTGATAGTC 93638
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| |||||||| ||||| || || | ||||||
Sbjct 93639 TTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 93670
Score = 140 bits (154), Expect = 8e-28
Identities = 166/225 (74%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| |||||||| || ||||| || || ||||||||||||||||| || || || | |||
Sbjct 100438 TCCACGAAGTCGAAGAACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTGAAAG 100497
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
||| | || ||||| || || || || || ||||| | | ||||| || ||||| |
Sbjct 100498 GGTACGACCGTCTTCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGAT 100557
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
||||| ||||| ||||| || ||| || || || || ||||||||| ||||| ||
Sbjct 100558 ACCTTCTTTGTCTTGGATTTTCGCTTTAACATTCTCAATTGTGTCAGAGGGCTCAACTTC 100617
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || |||||||| || || || || || || | ||||||
Sbjct 100618 CAGGGTAATAGTCTTTCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662
Score = 138 bits (152), Expect = 3e-27
Identities = 166/226 (73%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| |||||| | || || | ||| ||||| || ||||| || || || ||||| | ||
Sbjct 92159 TCCACGAAGGCGCAGCACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGACAG 92218
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
||| | |||||| || || || || || ||||| ||||| || || || ||||| || |
Sbjct 92219 GGTACGTCCATCCTCGAGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGGGAT 92278
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|||||||| ||||| || ||| || |||||||||||||| || ||| ||||||||
Sbjct 92279 GCCTTCCTTATCCTGAATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAACCTC 92338
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|| || || || ||||| || | ||||| || || | ||||||
Sbjct 92339 AAGGGTTATGGTTTTTCCGGTCAACGTCTTAACGAAAATTTGCATT 92384
Score = 136 bits (150), Expect = 9e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||||||||| || || || || || || ||||| | || || | || ||
Sbjct 93915 AGGACGAGGTGAAGAGTCGATTCCTTCTGTATATTGTAATCGGAGAGTGTGCGACCGTCC 93974
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| ||||| || || || || || || || |||| ||||| || |||
Sbjct 93975 TCTAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTATCC 94034
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||||||| || ||||| ||||| ||||| || | || || || |||||||| ||
Sbjct 94035 TGGATCTTTGTCTTGACGTTCTCGATCGTGTCCGATCCCTCTACGTCTAGAGTGATAGTT 94094
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || || | || || ||||| | ||||||||
Sbjct 94095 TTCCCAGTTAATGTTTTCACAAAGATTTGCATTTT 94129
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || || || ||||| |||||||| || || | || || || || ||
Sbjct 92587 AGAACGAGGTGGAGCGTTGATTCTTTCTGGATGTTGTAGTCTGACAGTGTTCTACCGTCC 92646
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||| || || || ||||| | || || |||||||| || | ||||||||||||
Sbjct 92647 TCGAGCTGTTTACCCGCAAAGATCAATCGCTGCTGGTCAGGCGGGATACCTTCCTTGTCC 92706
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| || || |||||||| |||||||| || ||| ||| ||||| | || || |||
Sbjct 92707 TGAATTTTCGCCTTCACGTTCTCGATGGTATCTGAGGGTTCGACCTCCAAGGTAATGGTC 92766
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| | ||||||||| || | |||||
Sbjct 92767 TTCCCCGTCAAAGTCTTTACGAAGATTTGCAT 92798
Score = 109 bits (120), Expect = 1e-18
Identities = 142/195 (73%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 210924 TCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAG 210983
|| || |||||||| || |||| || || | || || || || || || || || |||
Sbjct 92836 TCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACCGTCCTCGAGTTGTTTTCCAGCAAAG 92895
Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043
|| || || ||||||||||| |||| || || ||||| || || || ||| |||||
Sbjct 92896 ATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACGTTC 92955
Query 211044 TCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTT 211100
|| |||||||| |||| ||||| || || || || || |||||||| || || ||
Sbjct 92956 TCAATGGTGTC---GCTTGGCTCAACTTCAAGTGTTATTGTTTTTCCCGTAAGGGTTTTC 93012
Query 211101 ACAAACACCTGCATT 211115
||||| | |||||||
Sbjct 93013 ACAAAAATCTGCATT 93027
>seq19980
Length=299602
Score = 163 bits (180), Expect = 7e-35
Identities = 171/225 (76%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| |||||||| || ||||| |||||||||||||| |||||||| || || || | |||
Sbjct 144732 TCCACGAAGTCGAAGTACAAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCTGAAAG 144673
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
|| | ||||||||| || || || || || ||||| || | || || ||||| || |
Sbjct 144672 AGTACGTCCATCTTCTAGTTGTTTACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGGAT 144613
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|| || ||||| ||||| || || || || || || |||||||| |||||||||
Sbjct 144612 ACCCTCTTTGTCTTGGATTTTCGCCTTAACATTCTCAATTGTGTCAGAAGGTTCAACCTC 144553
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| || || || ||||||||||||||||| | ||||||
Sbjct 144552 CAGGGTGATGGTTTTCCCGGTGAGAGTCTTTACAAAGATCTGCAT 144508
Score = 149 bits (164), Expect = 1e-30
Identities = 166/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||||| ||||||||||| || |||||||| ||||| || || || |||| ||||||
Sbjct 144957 ACGAAGTCGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATATTGTAGTCCGAAAGGGT 144898
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||||||| |||||||| || || ||||| | | ||||| || || |||| |||
Sbjct 144897 GCGTCCATCTTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGTTGATCGGGGGGAATTCC 144838
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||| || ||||| || ||||| || || || ||||| || || || |
Sbjct 144837 TTCCTTGTCTTGAATCTTGGCCTTTACGTTCTCAATTGTATCAGAAGGCTCCACTTCCAA 144778
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| ||||| || || || || || || || | |||||
Sbjct 144777 GGTGATGGTCTTCCCAGTAAGGGTTTTGACGAAAATTTGCAT 144736
Score = 143 bits (158), Expect = 6e-29
Identities = 167/224 (75%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
|| ||||| || || || ||||| || ||||||||||| ||||| || || | || ||
Sbjct 145184 CGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAGAGCGTG 145125
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| ||||| || ||||| ||||||||||| || | | |||||| || || |||| ||||
Sbjct 145124 CGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGAATTCCT 145065
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCG 211070
|||||||| || || || ||| ||||| || || || || |||| || || ||
Sbjct 145064 TCCTTGTCTTGAATTTTGGCTTTAACGTTCTCAATCGTATC---GCTTGGCTCGACTTCA 145008
Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||||||||| ||||| || || || || ||||| | ||||||
Sbjct 145007 AGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158848313767520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |