Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq7231 102 7e-17 seq19980 98.7 9e-16 >seq7231 Length=219762 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || || | ||| || || ||| ||||| ||||||||||| | || || || || Sbjct 93684 CGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGAGAGGGTACGGCCG 93743 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || || || ||||| ||||| || ||||| ||||| || | || | || |||||| Sbjct 93744 TCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGGATGCCCTCTTTA 93803 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| |||||| || | | | | |||||||| | || || || | ||||| Sbjct 93804 TCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAACTTCAAGGGTGATG 93863 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 ||||||| || ||||| || |||||||| |||||| Sbjct 93864 GTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCATC 93899 Score = 102 bits (112), Expect = 7e-17 Identities = 144/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || |||||||| ||||||| ||||| || |||| || ||||| ||||| || || Sbjct 93936 TCCTTCTGTATATTGTAATCGGAGAGTGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAA 93995 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGT-TTGAGCGT 39212 || ||||||||||| || | || | | ||||| ||| ||| || ||| |||| | Sbjct 93996 ATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTATCCTGGATCTT-TGTCTTGACGTT 94054 Query 39213 CGCCACCGTAT-CGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | ||| | || || ||| ||||| | |||||| |||| || || | ||||| | Sbjct 94055 CTCGATCGTGTCCGATC-CCTCTACGTCTAGAGTGATAGTTTTCCCAGTTAATGTTTTCA 94113 Query 39272 CAAAGATTTGCATCTTT 39288 ||||||||||||| ||| Sbjct 94114 CAAAGATTTGCATTTTT 94130 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | | ||| | |||||| || || || ||||| || ||||| ||||||| Sbjct 92157 CCTCCACGAAGGCGCAGCACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGAC 92216 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| | || || || ||||| || || ||||||||||||||||| || | ||| Sbjct 92217 AGGGTACGTCCATCCTCGAGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGGG 92276 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || || || ||| ||| ||| || || | | | | ||||| | ||| || Sbjct 92277 ATGCCTTCCTTATCC-TGAATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAAC 92335 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || ||||||| |||| ||| ||||| || |||||||| Sbjct 92336 CTCAAGGGTTATGGTTTTTCCGGTCAACGTCTTAACGAAAATTTGCAT 92383 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||| | |||| || | ||||| || |||||| || || ||||| || | Sbjct 100208 CCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGAT 100267 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || ||||| |||| |||||||| ||||| ||||| || | | ||||| |||| || Sbjct 100268 AGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGCGGA 100327 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCAC 39236 | | || ||||| ||| | | || | | ||| | | |||||||| | || || Sbjct 100328 ATACCTTCCTTGTCT-TGAATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCAAC 100386 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| | ||||| ||||||||||| || ||||| ||||| Sbjct 100387 CTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434 >seq19980 Length=299602 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || || ||||||||| || || || |||| || || || | || || Sbjct 145173 CACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAGAGCGTGCGACCATCCTC 145114 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||||| || || || | | || || |||| ||| | | || ||||| | Sbjct 145113 GAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGAATTCCTTCCTTGTCT-T 145055 Query 39195 GATTTTCTGTTTGAGCGT-CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || ||| | || | ||| | | | ||||||||| | ||| || || | ||||| ||| Sbjct 145054 GAATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGACTTCAAGAGTGATCGTTT 144995 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || |||||||||||||| || ||||| Sbjct 144994 TTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429438552941024