Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq7231 102 7e-17
seq19980 98.7 9e-16
>seq7231
Length=219762
Score = 102 bits (112), Expect = 7e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|| || || | ||| || || ||| ||||| ||||||||||| | || || || ||
Sbjct 93684 CGCAAGACGAGATGCAGTGTCGACTCCTTTTGAATATTATAATCTGAGAGGGTACGGCCG 93743
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189
|| || || || ||||| ||||| || ||||| ||||| || | || | || ||||||
Sbjct 93744 TCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGGATGCCCTCTTTA 93803
Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249
||| |||||| || | | | | |||||||| | || || || | |||||
Sbjct 93804 TCCTGGATTTTTGCCTTCACATTTTCAATTGTATCGCTGGGTTCAACTTCAAGGGTGATG 93863
Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285
||||||| || ||||| || |||||||| ||||||
Sbjct 93864 GTTTTTCCAGTGAGCGTCTTCACAAAGATCTGCATC 93899
Score = 102 bits (112), Expect = 7e-17
Identities = 144/197 (73%), Gaps = 4/197 (2%)
Strand=Plus/Plus
Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153
|| || |||||||| ||||||| ||||| || |||| || ||||| ||||| || ||
Sbjct 93936 TCCTTCTGTATATTGTAATCGGAGAGTGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAA 93995
Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGT-TTGAGCGT 39212
|| ||||||||||| || | || | | ||||| ||| ||| || ||| |||| |
Sbjct 93996 ATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTATCCTGGATCTT-TGTCTTGACGTT 94054
Query 39213 CGCCACCGTAT-CGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271
| | | ||| | || || ||| ||||| | |||||| |||| || || | ||||| |
Sbjct 94055 CTCGATCGTGTCCGATC-CCTCTACGTCTAGAGTGATAGTTTTCCCAGTTAATGTTTTCA 94113
Query 39272 CAAAGATTTGCATCTTT 39288
||||||||||||| |||
Sbjct 94114 CAAAGATTTGCATTTTT 94130
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
||||| | | ||| | |||||| || || || ||||| || ||||| |||||||
Sbjct 92157 CCTCCACGAAGGCGCAGCACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGAC 92216
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
|| || ||| | || || || ||||| || || ||||||||||||||||| || | |||
Sbjct 92217 AGGGTACGTCCATCCTCGAGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGGG 92276
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236
| || || || ||| ||| ||| || || | | | | ||||| | ||| ||
Sbjct 92277 ATGCCTTCCTTATCC-TGAATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAAC 92335
Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| | || || ||||||| |||| ||| ||||| || ||||||||
Sbjct 92336 CTCAAGGGTTATGGTTTTTCCGGTCAACGTCTTAACGAAAATTTGCAT 92383
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
||||||| | |||| || | ||||| || |||||| || || ||||| || |
Sbjct 100208 CCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGAT 100267
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
|| ||||| |||| |||||||| ||||| ||||| || | | ||||| |||| ||
Sbjct 100268 AGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGCGGA 100327
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCAC 39236
| | || ||||| ||| | | || | | ||| | | |||||||| | || ||
Sbjct 100328 ATACCTTCCTTGTCT-TGAATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCAAC 100386
Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| | ||||| | ||||| ||||||||||| || ||||| |||||
Sbjct 100387 CTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434
>seq19980
Length=299602
Score = 98.7 bits (108), Expect = 9e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||| ||| || || ||||||||| || || || |||| || || || | || ||
Sbjct 145173 CACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAGAGCGTGCGACCATCCTC 145114
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||||||||| || || || | | || || |||| ||| | | || ||||| |
Sbjct 145113 GAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGAATTCCTTCCTTGTCT-T 145055
Query 39195 GATTTTCTGTTTGAGCGT-CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
|| ||| | || | ||| | | | ||||||||| | ||| || || | ||||| |||
Sbjct 145054 GAATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGACTTCAAGAGTGATCGTTT 144995
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|||| || |||||||||||||| || |||||
Sbjct 144994 TTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429438552941024
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |