Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq7231 167 6e-36 seq19980 149 1e-30 seq581 122 2e-22 seq877 113 1e-19 seq1368 102 2e-16 seq779 102 2e-16 seq11071 96.9 8e-15 seq9097 96.9 8e-15 seq19739 84.2 5e-11 seq845 84.2 5e-11 >seq7231 Length=219762 Score = 167 bits (184), Expect = 6e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 |||||||| || ||||| ||||| ||||| |||||||||| |||||| || | | ||| Sbjct 100670 CGAAGTCTAAGTACAAGATGGAGCGTGGACTCTTTTTGGATATTGTAGTCCGAAAGAGTA 100729 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| | ||| || ||||| ||||| | || |||||||| || |||||||| Sbjct 100730 CGTCCGTCTTCCAACTGTTTTCCAGCAAAGATTAATCTCTGTTGGTCTGGGGGAATACCC 100789 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||| |||||| ||| ||| |||||| || ||||| | |||||| || | Sbjct 100790 TCCTTGTCTTGAATCTTTGCCTTGACATTTTCGATTGTATCTGAAGATTCCACCTCAAGG 100849 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| ||||| || || | ||||| | ||| | |||||| Sbjct 100850 GTGATAGTCTTACCGGTTAGGGTTTTCACGAAAATCTGCATT 100891 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| || |||||||| |||| ||||| || | || ||||| || || Sbjct 92587 AGAACGAGGTGGAGCGTTGATTCTTTCTGGATGTTGTAGTCTGACAGTGTTCTACCGTCC 92646 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || || ||||| | ||| || ||||| ||||| |||||||||||||| Sbjct 92647 TCGAGCTGTTTACCCGCAAAGATCAATCGCTGCTGGTCAGGCGGGATACCTTCCTTGTCC 92706 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || |||||| |||||||| ||||||| ||| || || || || || ||| Sbjct 92707 TGAATTTTCGCCTTCACGTTCTCGATGGTATCTGAGGGTTCGACCTCCAAGGTAATGGTC 92766 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||||||||| |||| ||| | |||||| Sbjct 92767 TTCCCCGTCAAAGTCTTTACGAAGATTTGCAT 92798 Score = 141 bits (156), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || ||||| ||||| || ||||| || | || || || | | ||| Sbjct 100214 CGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGATAGCGTT 100273 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| |||||||| ||||| ||||| | | ||| || ||||||||||||||| Sbjct 100274 CGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGCGGAATACCT 100333 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||| |||||| ||| || |||||| || || | ||| || |||| Sbjct 100334 TCCTTGTCTTGAATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCAACCTCTAGA 100393 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| || |||| ||||||| ||| | ||||| Sbjct 100394 GTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| ||||| ||||| || || | ||||||||||| | || | || || Sbjct 93915 AGGACGAGGTGAAGAGTCGATTCCTTCTGTATATTGTAATCGGAGAGTGTGCGACCGTCC 93974 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 ||||||||||| |||||||| || || || || || || || ||||||||||| || || Sbjct 93975 TCTAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTATCC 94034 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| || ||||| ||||| || || ||||||| ||||| || Sbjct 94035 TGGATCTTTGTCTTGACGTTCTCGATCGTGTCCGATCCCTCTACGTCTAGAGTGATAGTT 94094 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || || ||||| | || | ||||||||| Sbjct 94095 TTCCCAGTTAATGTTTTCACAAAGATTTGCATTTT 94129 Score = 132 bits (146), Expect = 1e-25 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||| || | ||| ||||| |||||||| || | ||||||||||| || || Sbjct 92162 ACGAAGGCGCAGCACCAAGTGCAGAGTTGATTCTTTCTGAATATTGTAATCGGACAGGGT 92221 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || || || || |||||||| ||||| || || || || || || || || Sbjct 92222 ACGTCCATCCTCGAGTTGTTTTCCAGCGAATATAAGACGCTGCTGATCAGGGGGGATGCC 92281 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || || || ||| ||| || ||||||||| || |||| || || || | Sbjct 92282 TTCCTTATCCTGAATTTTTGCCTTTACGTTTTCGATGGTATCCGAGGGCTCAACCTCAAG 92341 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || || ||||| || || | ||| | ||||||| Sbjct 92342 GGTTATGGTTTTTCCGGTCAACGTCTTAACGAAAATTTGCATT 92384 Score = 116 bits (128), Expect = 9e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || ||||| ||||| ||||| |||||||||| |||||| || | | || Sbjct 100441 ACGAAGTCGAAGAACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTGAAAGGGT 100500 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| || || || || || ||||| | | ||||| || || || ||||| Sbjct 100501 ACGACCGTCTTCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACC 100560 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| ||||||||||| ||| || || ||| || || ||||| |||| || || || | Sbjct 100561 TTCTTTGTCTTGGAT-TTTCGCTTTAACATTCTCAATTGTGTCAGAGGGCTCAACTTCCA 100619 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||||| | ||| | ||||| Sbjct 100620 GGGTAATAGTCTTTCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| ||||||||| ||| || || | || |||||| | || | ||||| Sbjct 93231 AGCACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGGGTGCGGCCATCC 93290 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||| || ||||| || || | ||||| ||||| || ||||| || || ||||| Sbjct 93291 TCCAACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCTTTGTCC 93350 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| || ||| ||| || ||||| || | || || || | |||||||||| Sbjct 93351 TGGATCTTTGCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTTCAAGCGTGATCGTC 93410 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || | ||| || | || | |||||| Sbjct 93411 TTGCCGGTGAGAGTCTTGACAAAGATCTGCATT 93443 >seq19980 Length=299602 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| |||||||||||||| ||||| || ||||| | |||||| || | | || Sbjct 144957 ACGAAGTCGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATATTGTAGTCCGAAAGGGT 144898 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| || || ||||| | || ||||| ||||| ||||| || Sbjct 144897 GCGTCCATCTTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGTTGATCGGGGGGAATTCC 144838 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| ||||| ||| || || || || || || | ||||| || || Sbjct 144837 TTCCTTGTCTTGAATCTTGGCCTTTACGTTCTCAATTGTATCAGAAGGCTCCACTTCCAA 144778 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | ||||| | ||| | |||||| Sbjct 144777 GGTGATGGTCTTCCCAGTAAGGGTTTTGACGAAAATTTGCAT 144736 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || ||||| || |||||||| || ||||||| |||||| || | | ||| Sbjct 144729 ACGAAGTCGAAGTACAAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCTGAAAGAGT 144670 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||||||| || || || || ||||| || | || || || || || ||||| Sbjct 144669 ACGTCCATCTTCTAGTTGTTTACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGGATACC 144610 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||||||||| || ||| ||| || || ||||| || | ||| || || | Sbjct 144609 CTCTTTGTCTTGGATTTTCGCCTTAACATTCTCAATTGTGTCAGAAGGTTCAACCTCCAG 144550 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || || | ||| |||| || | ||||| Sbjct 144549 GGTGATGGTTTTCCCGGTGAGAGTCTTTACAAAGATCTGCAT 144508 Score = 96.9 bits (106), Expect = 8e-15 Identities = 108/143 (76%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || |||||||| || || || || || || |||||||| | ||||| |||| | || Sbjct 145184 CGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAGAGCGTG 145125 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || ||||| || || ||||| || | | |||||| ||||| ||||| ||| Sbjct 145124 CGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGAATTCCT 145065 Query 225613 TCCTTGTCTTGGATCTTTTGCTT 225635 ||||||||||| || ||| |||| Sbjct 145064 TCCTTGTCTTGAAT-TTTGGCTT 145043 >seq581 Length=569 Score = 122 bits (134), Expect = 2e-22 Identities = 127/164 (77%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 7566 TATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGG 7625 |||| |||| | ||||| ||||| || ||||| ||| | ||||| || | ||| || || Sbjct 265 TATTGTTACTTCTCATGCTTTTGTAATAATTTT-TTTATAGTTATACCTGCTATAATTGG 207 Query 7626 CGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAG 7685 ||||| || ||||| || ||||||||||| ||| ||| || ||||| ||||||||| | Sbjct 206 AGGTTTTGGTAATTGGTTAGTTCCTTTAATAATTTCTGCACCAGATATAGCTTTTCCACG 147 Query 7686 GCTTAACAATATAAGTTTTTGATTACTACCGCCTTC-CTTATTT 7728 | || |||||||||||||||||| || ||||| |||| || Sbjct 146 TTTAAATAATATAAGTTTTTGATTATTAGTACCTTCTCTTAGTT 103 >seq877 Length=1197 Score = 113 bits (124), Expect = 1e-19 Identities = 116/149 (78%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 7566 TATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGG 7625 |||| |||| | ||||| ||||| || ||||| ||| | ||||| || | ||| || || Sbjct 933 TATTGTTACTTCTCATGCTTTTGTAATAATTTT-TTTATAGTTATACCTGCTATAATTGG 991 Query 7626 CGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATA-TGGCTTTTCCAA 7684 ||||| || ||||| || ||||||||||| ||| ||| || |||| | ||||||||| Sbjct 992 AGGTTTTGGTAATTGGTTAGTTCCTTTAATAATTTCTGCACCAGATATTAGCTTTTCCAC 1051 Query 7685 GGCTTAACAATATAAGTTTTTGATTACTA 7713 | | || |||||||||||||||||| || Sbjct 1052 GTTTAAATAATATAAGTTTTTGATTATTA 1080 >seq1368 Length=727 Score = 102 bits (112), Expect = 2e-16 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || || ||||||||||| |||||||||||||| | |||||||| || || ||| Sbjct 486 TTCTGGGTGTCCAAAAAATCAAAATAAATGTTGATATAAAATAGGATCACCACCACCTCT 545 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||||||||||| ||||||||||||||| ||| ||||| Sbjct 546 AGGATCAAAAAATGTAGTATTAAAATTTCGATCTGTTAA 584 >seq779 Length=691 Score = 102 bits (112), Expect = 2e-16 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || || ||||||||||| |||||||||||||| | |||||||| || || ||| Sbjct 208 TTCTGGGTGTCCAAAAAATCAAAATAAATGTTGATATAAAATAGGATCACCACCACCTCT 149 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||||||||||| ||||||||||||||| ||| ||||| Sbjct 148 AGGATCAAAAAATGTAGTATTAAAATTTCGATCTGTTAA 110 >seq11071 Length=733 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/100 (82%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAA-TGTTGATAAAGGATAGGATCGCCTCCGCCTG 370730 ||| || || ||||||||||| |||||| |||||||| | |||||||| || || ||| Sbjct 392 TTCTGGGTGTCCAAAAAATCAAAATAAAATGTTGATATAAAATAGGATCACCACCACCTC 451 Query 370731 ATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||||||||||| ||||||||||||||| ||| ||||| Sbjct 452 TAGGATCAAAAAATGTAGTATTAAAATTTCGATCTGTTAA 491 >seq9097 Length=388 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/100 (82%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || || ||||||||||| |||||||||||||| | |||||||| || || ||| Sbjct 245 TTCTGGGTGTCCAAAAAATCAAAATAAATGTTGATATAAAATAGGATCACCACCACCTCT 186 Query 370732 TGGATC-AAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||||| |||||| ||||||||||||||| ||| ||||| Sbjct 185 AGGATCTAAAAAATGTAGTATTAAAATTTCGATCTGTTAA 146 >seq19739 Length=384723 Score = 84.2 bits (92), Expect = 5e-11 Identities = 77/96 (80%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732 |||||||||||||||||||| || | || |||||| | || ||||| || || ||| Sbjct 201301 TCAGGATGACCAAAAAATCAAAACATATCTTGATATATAATCGGATCTCCACCCCCTCTA 201360 Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTT 370768 |||||||||||| |||||||||||| | ||| ||| Sbjct 201361 GGATCAAAAAAG-AAGTATTAAAATTACGATCTGTT 201395 >seq845 Length=438 Score = 84.2 bits (92), Expect = 5e-11 Identities = 95/124 (77%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 7606 GTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCT 7665 ||||| || | ||| || || ||||| || ||||| || ||||||||||| ||| ||| Sbjct 435 GTTATACCTGCTATAATTGGAGGTTTTGGTAATTGGTTAGTTCCTTTAATAATTTCTGCA 376 Query 7666 CCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC-CTT 7724 || ||||| ||||| | | | |||| |||||||| ||||||||| || ||||| ||| Sbjct 375 CCAGATATAGCTTT--CCACGTTTAATAATATAAG-TTTTGATTATTAGTACCTTCTCTT 319 Query 7725 ATTT 7728 | || Sbjct 318 AGTT 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192218768750912