Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq19464 145 7e-30 >seq19464 Length=44290 Score = 145 bits (160), Expect = 7e-30 Identities = 440/676 (65%), Gaps = 14/676 (2%) Strand=Plus/Plus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 |||||| ||| |||||||| || || ||||| |||||||| ||||||||||| | Sbjct 12025 AACACCCGCTTTCTGGTATTCACCAACGCGTTTTTCAAAGAAATTCGTTTTGCCTTCGAG 12084 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 ||||| | |||||||| || |||||||| || | || | | || | || || || Sbjct 12085 GGAAATTTGCTCCATAAAGTCGAACGGATTCGTGGACTTCCATAGCTTCTGGCAGTTGAG 12144 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 | | |||| || ||||| || || || || || |||| || |||||||| || Sbjct 12145 CTCGATGAGCAGACGATCAGCAACGAACTCAATGTATCTCTTCATCAGATCGCAGTTCAT 12204 Query 4427 TCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTC 4486 || | | ||||||| || | || | ||| |||||||| || | || || || Sbjct 12205 ACCCAACATAGCGACAGGTAATGCTTCAGTGAGAAATTCTTGTTCGATGGCAACAGCGTC 12264 Query 4487 TGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAA 4546 | || || | | ||| ||| |||||| || | | || | |||| | Sbjct 12265 CTTAATGATTTGATAGATTCGCGCTTCGCTTGGTTTGTTGATCAGGTGTTTGAACATCAG 12324 Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAA 4606 ||| || || || |||| ||||||||| | || || || || || || | Sbjct 12325 ACAGGCGAAGTCTGTGTGCATACCTTCGTCACGTGAGATGAGCTCATTGCTGAAGGTGAG 12384 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 || ||||| | ||||| |||||| ||||| || ||||||||||| | ||| || || Sbjct 12385 GCCAGGCATGATACCTCGCTTTTTCAGCCAGAAAATAGCGGCAAACGCCCCGCTGAAAAA 12444 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT 4726 |||||||| || || || || || || | || ||| ||| || | || || Sbjct 12445 AATGCCTTCGACTGCAGCGAATGCCACAACACGCTCACCGTACG---CAGCCTCCTCGTT 12501 Query 4727 A---ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783 | ||||| | ||| ||||| | ||| || ||||||| ||| || ||||| | || || Sbjct 12502 AGCGATCCACTCTAAGGCCCAATCAGCCTTCTTCTTAATGCATGGCATTGTCTCAATTGC 12561 Query 4784 GTTAAATAAT---TTAC-TTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGC 4839 | || | | | || || | | | ||| || || |||| || || || Sbjct 12562 GCGGAAGAGTCGATCACGTTCCGTGGACTCGGT----GATGTATGTGTTTAGCAGAAGAG 12617 Query 4840 TATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTT 4899 ||||||||| ||||| |||||||| || |||||||| ||||| || || | || | Sbjct 12618 AATACATTTCTGAATGAATATTTTCCATCATTATCTGAAAACCGTAGAAACAACGCGCCT 12677 Query 4900 CTGTTACTTGAACTTC 4915 | | ||||| ||||| Sbjct 12678 CGGGCACTTGTACTTC 12693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426943174969184