Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_030696.1 Length=93139 Score E Sequences producing significant alignments: (Bits) Value seq19061 309 2e-79 >seq19061 Length=15585 Score = 309 bits (342), Expect = 2e-79 Identities = 293/374 (78%), Gaps = 0/374 (0%) Strand=Plus/Minus Query 71933 TGGCAAACGACACCGTGATCACCGTGATCGGAAATCTGACCGCCGATCCCGAACTGCGCT 71992 ||||| ||||||||| ||||| ||| |||| || |||| ||||||||||| ||||| | Sbjct 14214 TGGCAGGCGACACCGTCATCACTGTGGTCGGCAACTTGACGGCCGATCCCGAGCTGCGGT 14155 Query 71993 TCACCCCCTCGGGCGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCGCGGTACTTCG 72052 |||| || | |||||| | ||||| |||||||||||||| || || ||| ||||| Sbjct 14154 TCACACCGACCGGCGCGGCCGTCGCGAACTTCACCGTCGCGTCGACGCCTCGGACCTTCG 14095 Query 72053 ACAAGCAGTCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGC 72112 || ||| |||||||||||||||||| ||| ||||| ||| |||||||||||||||||| Sbjct 14094 ACCGTCAGACCAACGAGTGGAAGGACGGCGAAGCGCTGTTCTTGCGCTGCAACATCTGGC 14035 Query 72113 GCGAGCCGGCCGAGAACGTCACCGAGTCGCTGTCCAAGGGCATGCGCGTCATCGTCCAGG 72172 ||||| | || |||||||| ||||||||||| ||| |||| |||||||||||| | Sbjct 14034 GCGAGGCCGCGGAGAACGTGGCCGAGTCGCTGACCAGGGGCGCGCGCGTCATCGTGACCG 13975 Query 72173 GTCGCCTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCGAGC 72232 | | |||||||||||| |||||||| || |||||||| ||||| ||| |||||| Sbjct 13974 GCAGGCTCAAGCAGCGCTCGTACGAGACCCGCGAGGGCGAGAAGCGGACCGTCGTCGAGC 13915 Query 72233 TCGAGGTCGAGGAGATCGGCCCCGCACTGCGGTACGCCACCGCCCGCGTGGTCCGGACCC 72292 |||| ||||| |||||||| || | ||||| ||| ||||||| ||| ||| || Sbjct 13914 TCGAAGTCGACGAGATCGGGCCTTCCCTGCGCTACTCCACCGCGAAAGTGAACCGCGCCG 13855 Query 72293 CGCGTAACGGCGGT 72306 |||| ||||||| Sbjct 13854 CGCGCGGCGGCGGT 13841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 297845755356800