Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_030905.1 Length=73752 Score E Sequences producing significant alignments: (Bits) Value seq12436 105 3e-18 >seq12436 Length=461 Score = 105 bits (116), Expect = 3e-18 Identities = 216/318 (68%), Gaps = 5/318 (2%) Strand=Plus/Minus Query 8837 CTCAACAAGATCAAAGACCTTGTCCCCGAGGAGTGCGAGGTTAGCTGGAAGTATGTTGAT 8896 || || ||||| ||||||||||| || ||||||||| |||| ||||||| | ||||| Sbjct 403 CTGAAGAAGATGAAAGACCTTGTTCCGGAGGAGTGCTCGGTTCACTGGAAGAAGGTTGA- 345 Query 8897 TCAGC-GATCAAGCCGAACGGAAACGTGGCGGCTCCAAAGGTTCCGATTTTCGATGGCAT 8955 | || | | ||| ||| || | |||||| |||| || | |||||| || Sbjct 344 -CGGCTGGGC--GCCTCCGGGACACAAGATCAAGCCAAAGATTCCTATCTACGATGGAAT 288 Query 8956 CTCAAAGCGGGGAACGTCCTACAAAATACCTGTAGAGAACTCGTTGTGGTATCCATTACT 9015 | | | || | | | || || || || ||| | || |||||||| | || Sbjct 287 CAAGATTCTTGGTTCAGCTTGGCCGATTCCAGTGGATAACACCTTCTGGTATCCGATGCT 228 Query 9016 TATGGAGAACGGCGACTACAGGGGACGTCAACTACTGCGTGCCGCATTCCAGCCTTGGTT 9075 |||||||| || |||||| || || | || || || | || || ||| ||||||| Sbjct 227 GATGGAGAATGGTGACTACTACGGTCGGAAGCTTCTTCGGCCGGCGTTTCAGTCTTGGTT 168 Query 9076 CTTCAGCACTCTTATTCACCTCTACCAGAACAAGTACTTCGAGCGGTTCGGCGAGCCGGT 9135 |||||||| |||| ||||| | | || ||||| |||||| ||||| |||||||| Sbjct 167 CTTCAGCATTCTTCTTCACTTGTTTGCCAATCGGTACTACGAGCGATTCGGTGAGCCGGT 108 Query 9136 GCCGATCGGACGTGCACC 9153 ||| | ||||| || || Sbjct 107 TCCGGTAGGACGCGCTCC 90 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235822815946464