Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_030905.1
Length=73752
Score E
Sequences producing significant alignments: (Bits) Value
seq12436 105 3e-18
>seq12436
Length=461
Score = 105 bits (116), Expect = 3e-18
Identities = 216/318 (68%), Gaps = 5/318 (2%)
Strand=Plus/Minus
Query 8837 CTCAACAAGATCAAAGACCTTGTCCCCGAGGAGTGCGAGGTTAGCTGGAAGTATGTTGAT 8896
|| || ||||| ||||||||||| || ||||||||| |||| ||||||| | |||||
Sbjct 403 CTGAAGAAGATGAAAGACCTTGTTCCGGAGGAGTGCTCGGTTCACTGGAAGAAGGTTGA- 345
Query 8897 TCAGC-GATCAAGCCGAACGGAAACGTGGCGGCTCCAAAGGTTCCGATTTTCGATGGCAT 8955
| || | | ||| ||| || | |||||| |||| || | |||||| ||
Sbjct 344 -CGGCTGGGC--GCCTCCGGGACACAAGATCAAGCCAAAGATTCCTATCTACGATGGAAT 288
Query 8956 CTCAAAGCGGGGAACGTCCTACAAAATACCTGTAGAGAACTCGTTGTGGTATCCATTACT 9015
| | | || | | | || || || || ||| | || |||||||| | ||
Sbjct 287 CAAGATTCTTGGTTCAGCTTGGCCGATTCCAGTGGATAACACCTTCTGGTATCCGATGCT 228
Query 9016 TATGGAGAACGGCGACTACAGGGGACGTCAACTACTGCGTGCCGCATTCCAGCCTTGGTT 9075
|||||||| || |||||| || || | || || || | || || ||| |||||||
Sbjct 227 GATGGAGAATGGTGACTACTACGGTCGGAAGCTTCTTCGGCCGGCGTTTCAGTCTTGGTT 168
Query 9076 CTTCAGCACTCTTATTCACCTCTACCAGAACAAGTACTTCGAGCGGTTCGGCGAGCCGGT 9135
|||||||| |||| ||||| | | || ||||| |||||| ||||| ||||||||
Sbjct 167 CTTCAGCATTCTTCTTCACTTGTTTGCCAATCGGTACTACGAGCGATTCGGTGAGCCGGT 108
Query 9136 GCCGATCGGACGTGCACC 9153
||| | ||||| || ||
Sbjct 107 TCCGGTAGGACGCGCTCC 90
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 235822815946464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |