Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq4405 120 1e-22 seq19061 107 6e-19 >seq4405 Length=914 Score = 120 bits (132), Expect = 1e-22 Identities = 185/259 (71%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 33987 GCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGT-GTCCGGGT 34045 |||||| |||||||| ||| ||| | || ||| | |||| | |||| |||||| | Sbjct 269 GCCGTTACGGTGCTTGCCGAGGATGAGGTCGGCCTCCCCGCC-TCGGGGGTCGTCCGGCT 211 Query 34046 -GATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCG 34104 ||| | | || |||| ||| | || | || ||||||||||||||| | || || Sbjct 210 CGATCG-CGTCCGGGCGGTGCACCAGGATAACCATGTCGGCGTCCTGCTCCAACGATCCA 152 Query 34105 GACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTG 34164 ||||||||||||||||| | | ||| ||||||| | ||||||||| || |||||| Sbjct 151 GACTCGCGCAGGTCCGAGACCTGCGGACGCTTGTCGGTGCGCTGCTCCGGGCCGCGGTTC 92 Query 34165 AGCTGCGACAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGCTTGCACTGGCGG 34224 ||||| | | ||| |||||| | | || ||| ||||||| |||||| | |||| Sbjct 91 AGCTGGCTGATCGCGACCACGGGAACCTCGAGTTCCTTGGCCAGGAGCTTGAGATTGCGG 32 Query 34225 GACATGTCGCTGACGTCCT 34243 || | |||| ||| |||| Sbjct 31 GAGAAGTCGGAGACCTCCT 13 >seq19061 Length=15585 Score = 107 bits (118), Expect = 6e-19 Identities = 235/345 (68%), Gaps = 13/345 (4%) Strand=Plus/Plus Query 33987 GCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGT-GTCCGGGT 34045 |||||| |||||||| ||| ||| | || ||| | |||| | |||| |||||| | Sbjct 10432 GCCGTTACGGTGCTTGCCGAGGATGAGGTCGGCCTCCCCGCC-TCGGGGGTCGTCCGGCT 10490 Query 34046 -GATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCG 34104 ||| | | || |||| ||| | || | || ||||||||||||||| | || || Sbjct 10491 CGATCG-CGTCCGGGCGGTGCACCAGGATAACCATGTCGGCGTCCTGCTCCAACGATCCA 10549 Query 34105 GACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTG 34164 ||||||||||||||||| | | ||| ||||||| | |||||||| | |||||| Sbjct 10550 GACTCGCGCAGGTCCGAGACCTGCGGACGCTTGTCGGTGCGCTGCTCGGGCCCTCGGTTG 10609 Query 34165 AGCTGCGACAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGCTTGCACTGGCGG 34224 ||||| ||| ||| ||||| | | ||||| |||| || |||||| ||| ||| Sbjct 10610 AGCTGGCTGAGCGCGACGACGGGCACTTCGAGCTCTTTGGCGAGGAGCTTGAGCTGCCGG 10669 Query 34225 GACATGTCGCTGACGTCCT--CGGTGCGAGTTGAC----TTGCCGGAGCTCTCCAGCAAC 34278 || | || ||| || | || | || | ||| ||||||||| | || | | Sbjct 10670 GAGAACTCCGAGACCTCTTGCTGGCGGGACTCGACTTTTTTGCCGGAGGT---CATGAGC 10726 Query 34279 TGCAGGTAGTCCACCACCAGCAGGCTCAACCCATGGCGCTGCTTG 34323 || ||||||||||| | | || | | | |||||||||||| Sbjct 10727 TGGAGGTAGTCCACGATGACGAGTTTGAGGGCGTGGCGCTGCTTG 10771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160425036131520