Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_030911.1 Length=45858 Score E Sequences producing significant alignments: (Bits) Value seq19061 302 1e-77 >seq19061 Length=15585 Score = 302 bits (334), Expect = 1e-77 Identities = 278/352 (79%), Gaps = 0/352 (0%) Strand=Plus/Minus Query 36171 ATGGCAGGCGAAACCATCATCACGGTAATCGGCAACCTGACAGCCGATCCGGAACTGCGG 36230 ||||||||||| ||| ||||||| || |||||||| |||| |||||||| || |||||| Sbjct 14215 ATGGCAGGCGACACCGTCATCACTGTGGTCGGCAACTTGACGGCCGATCCCGAGCTGCGG 14156 Query 36231 TTCACTCCGTCCGGCGCGGCGGTCGCGAACTTCACGGTCGCTTCGACTCCGCGACAGTTC 36290 ||||| ||| |||||||||| |||||||||||||| ||||| ||||| || || ||| Sbjct 14155 TTCACACCGACCGGCGCGGCCGTCGCGAACTTCACCGTCGCGTCGACGCCTCGGACCTTC 14096 Query 36291 GACCGGGACGCGAACGAGTGGAAGGACGGCGATCCGCTGTTCATGCGCTGCAACCTGTGG 36350 ||||| | | |||||||||||||||||||| |||||||| ||||||||||| | ||| Sbjct 14095 GACCGTCAGACCAACGAGTGGAAGGACGGCGAAGCGCTGTTCTTGCGCTGCAACATCTGG 14036 Query 36351 CGTGACGCGGCGGAGAACGTCACGGACTCGCTGTCGAAGGGGACTCGGGTCATCGTGCAG 36410 || || || ||||||||||| | || |||||| | | ||| | || ||||||||| Sbjct 14035 CGCGAGGCCGCGGAGAACGTGGCCGAGTCGCTGACCAGGGGCGCGCGCGTCATCGTGACC 13976 Query 36411 GGCCGGCTGAAACAGCGGAGCTACGAGGACAAAGAGGGCGTCACGCGGACCATCGTCGAG 36470 ||| |||| || ||||| |||||| | ||||||| | ||||||| |||||||| Sbjct 13975 GGCAGGCTCAAGCAGCGCTCGTACGAGACCCGCGAGGGCGAGAAGCGGACCGTCGTCGAG 13916 Query 36471 CTGGAAGTGGACGAGATCGGTCCGTCCCTGAAGTACGCGACGGCGAACGTGA 36522 || ||||| ||||||||||| || |||||| ||| | || ||||| |||| Sbjct 13915 CTCGAAGTCGACGAGATCGGGCCTTCCCTGCGCTACTCCACCGCGAAAGTGA 13864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146588396760320