Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq19563 443 3e-119
seq19464 165 1e-35
>seq19563
Length=274849
Score = 443 bits (490), Expect = 3e-119
Identities = 1004/1498 (67%), Gaps = 20/1498 (1%)
Strand=Plus/Plus
Query 76760 CTTTATTTTATTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAG 76819
||| || || |||| || | || |||||||| | || ||| || || ||||| ||
Sbjct 229882 CTTGATCTTCGTCTTGTCTACAGTGAACTGAATCGCTTGAGCTGCAGGCTTCGTACGCAG 229941
Query 76820 ATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTT 76879
|||||||| || || || ||||| || |||| || ||||| ||||| || | ||
Sbjct 229942 GTAGTACATTCCGGTCTTGAGACCAAGTTTCCAGCCATAGAAGTGCATCGAGGTTAACTT 230001
Query 76880 GGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCC 76939
| |||| | | || |||| ||| | ||| | || ||||| ||||||||||| |||||
Sbjct 230002 GCCATAATTGGTTTCAGCTAGATGGACATTTAGTGATTGACTCTGATCGATGAAGGCTCC 230061
Query 76940 TCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAAC 76999
| |||||| ||||| || || || | || || || || ||||| | || | | |
Sbjct 230062 ACGATCAGCAGCCATCTTGATGATATTTTTCTGTGGTATCTCCCATACGGTACGGTAGAG 230121
Query 77000 TTGTTTGATATCATCTGGAAGGTTTGTATTTTGAATGGAACCACCATCTGATATAATTGT 77059
|| | | | ||||| || | || | || ||| || | | |
Sbjct 230122 CAACTTAAGGTTTTTTGGAATGTCAAGCCTCTGGACTGACCCATTATAAGCAACCA---- 230177
Query 77060 ATTCTTTAT--ATCA--TCATTCCACAATTTCCTC--TCTGTTAAAACTCTAAGGAGATG 77113
|||| || ||| |||||||| | | ||| ||||||| | || |||| |||||
Sbjct 230178 ATTCGTTGCGCATCGACTCATTCCAAAGT--CCTAATTCTGTTAGATCTTTAAGTAGATG 230235
Query 77114 AGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATA 77173
| |||| || | |||||| || || || || |||| ||| | ||| || || |||||
Sbjct 230236 ATGATTGACCACTTGAAACTCACCTGATAACACTCGACGTGAGTACGCGTTGCTCGTATA 230295
Query 77174 TGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGC 77233
|||||| | ||||||||||| || | ||| || || || || ||||| |||||||||||
Sbjct 230296 TGGTTCTATGGATTCATTGTTGCCAAGAATCTGGGCGGTCGATGCAGTGGGCATAGGTGC 230355
Query 77234 CACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATC 77293
|| | | ||||| | | ||||| | | || ||| ||||||| ||| ||
Sbjct 230356 CAATAGGAGGCTATTGCGCACACCATATTTAGCAATCTTAGCTTTTAGCGCGGCCCAGTC 230415
Query 77294 CCAAAGAT--CTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCA 77351
||||||| ||| || || |||| | ||| ||||| | || || ||| ||
Sbjct 230416 CCAAAGAGAACTGGGAGTG--ACGCCCCACATATCATATTGCAATATACCTTTAGATACA 230473
Query 77352 TATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCC 77411
|| || | || |||||||| | ||||| | || | ||||| || ||||||
Sbjct 230474 GGCGAACCCTCGTAAGTTTCATACGTGCCTTCCACCTTCGCAATATCACAGCTTGCTTCC 230533
Query 77412 AATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTA 77471
|| || ||||| || || || || || || || || || || |||||| |||
Sbjct 230534 AAAGCGCCGTAGTAGATAGTCTCAAAGATTAGTTTGTTAAGTTCCATTGCTTCGGGACTG 230593
Query 77472 TCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATA 77531
|||||||| || | || | || || | || || | || || |||||||| |||||
Sbjct 230594 TCAAACGGTAAACGCAATATGATGAAAGTGTCGGCAAGCCCTTGGACTCCAATTCCAATC 230653
Query 77532 GGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATA 77591
|||| ||| | |||||| | | |||||||||| ||||| || |||| || |||
Sbjct 230654 GGTCGATGACGTTTATTGCTATGCTCTGCTTCTGGAACTGGATAGTAGTTAACATCGATA 230713
Query 77592 ATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAAT 77651
|| || ||||| |||| || |||||| || || || ||||| ||| |||||
Sbjct 230714 ATCTTGTTGAGGTTTCGTGTCACAACTTTAGTAACCTCTTTGAGTTTTCCAAAGTCAAAC 230773
Query 77652 CTTCCATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCA 77711
| || || | ||||| || | || | || || || || |||||||| | |||
Sbjct 230774 TTGCCTTCATTGACAAAGCGATTGAGTGCGAGTGACGCAAGGTTGCAAACTGCGATTTCA 230833
Query 77712 TTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGA 77771
| || || ||| | ||||| || ||||||| |||| || ||||| || || |||
Sbjct 230834 TCAGGAGAGGAATACTCGATTATTTCCGTACATAAATTAGAGCACTTGATTGTTCCAAGA 230893
Query 77772 TTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTT 77831
||||| || |||||||||| || || | || ||||| | || | || || || |||
Sbjct 230894 TTTTGCTGATTGCTCTTTTGGTTACAAGCATCTTTATATAAGATGTAAGGTGTGCCTGTT 230953
Query 77832 TCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAG-CTTTTATCATAGATTTGTA 77890
||||| || ||||| ||| | | ||| | | ||| | ||| || | || |
Sbjct 230954 TCAATTTGACTTTCGAGAATGGCATACCAAA-GTTTCTGGGCTTCTACCTGGCGCATGAA 231012
Query 77891 TCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATC 77950
|| | ||| | ||||||||| || || ||| || || | ||||||| ||
Sbjct 231013 GCGGCCCTCGCGTTCATATTGCTCGTAGAGTTTTTCGAACTCCTTTCCCCAACAGTCGCT 231072
Query 77951 CAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTT 78010
|| || || |||| ||| | ||||||||| ||||| | |||| ||||| |||||
Sbjct 231073 CAGCCCCGGACATTGATTGGAGCACATCAAAGACCACTGGCCATTTTCCTCGACTCGACG 231132
Query 78011 CATAAAGAGATCAGGTATCCATAGAGCAATA-AATAGATCTCGGGTTCTATGTTCTTCAT 78069
|||||| || ||||||| ||| || || ||| || ||||| || | ||| |||||||||
Sbjct 231133 CATAAACAGGTCAGGTACCCAAAG-GCCATAGAAAAGATCACGAGCTCTGTGTTCTTCAA 231191
Query 78070 TTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGAT 78129
| || |||||||| | |||||| || || | ||||| | |||||||||||| | ||
Sbjct 231192 TACCAGTATTCTTGCGCAAATCGAGGAATTCAAAGATATCGGCATGCCATGGTTCCAAAT 231251
Query 78130 ATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTAT 78189
| || || | | | || || | |||||||||||||| || | ||||| || |||||||
Sbjct 231252 AGATCGCAAAAGCACCCGGCCTCTTATTACCTCCCTGGTCAACATATCGCGCTGTGTTAT 231311
Query 78190 TATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATA 78247
| || || | | |||||| | ||| || || |||||||| || || || | |||||
Sbjct 231312 TGTACACACGAAGCATTGGCACAATGCCATTCGATGTTCCGTTAGTGCCTGCTATATA 231369
Score = 102 bits (112), Expect = 1e-16
Identities = 337/515 (65%), Gaps = 18/515 (3%)
Strand=Plus/Plus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| || ||||| || || ||||| || ||||| ||||| |||||| | |||||
Sbjct 231749 GTGCCGGCATTGAACAACGTCGGGCTGGCGTGCGTGAACCACTTTTCACTCATCAGATTA 231808
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGA--TGAATTCCTACCGCTACACGCATCA 78516
|||||||| || || | || ||||| | || ||||| || || ||||||||||| |
Sbjct 231809 TATGTTTCTATGGCAGCGTCGATGTC--AGTGCCGTGAATACCAACAGCTACACGCATGA 231866
Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576
||| || || |||| |||||| || || ||||| | || ||||| ||||
Sbjct 231867 GCATGTGTTGTGGTCGCTCAACCACTTTTCCATCAATTTTAAGCAGATATGAGCGCTCCA 231926
Query 78577 AAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTCTCGTAAATAATAACAGAATT 78634
| || ||| || ||||| ||||| ||||| || | | ||| | ||| ||| ||
Sbjct 231927 ATGTACGAAAGCCGAAATAATTGTAGTTGAAA--TCACGATTGTAGACGATAGCAGCATC 231984
Query 78635 TAGTTTATCTTTGTATTTGGTA--ACAATATCCATGACAGTAGTTGAAATAATAGGAGAT 78692
|||| ||||| |||||| || || ||||| ||| |||| || || || |
Sbjct 231985 GAGTTCATCTT--TATTTGCTATGACGATATCGTAGACTTCTTTTGAGATCATGGGCATT 232042
Query 78693 CGTACACCATTTT---TAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTAAAT 78749
| ||| ||| | | | ||| || | | ||| || | || |||
Sbjct 232043 GGCTTGCCAGTTTTGCTCTGTGTCACAAAG-CGCAGCATGCTT--ATAATCTCTGAAAAC 232099
Query 78750 AGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAA 78809
| || || || || || || ||||| || | || || | || |||| || |||||
Sbjct 232100 TGCTTCTTAGTCTCTTTATGAAGATTCGAAATTGCAATACGGGCCGCTAAAACCGCATAG 232159
Query 78810 TCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATA 78869
|| ||||| || || || |||||||| ||||||| || | | || | |||| |
Sbjct 232160 TCCGGATGCTGGGTCGTCATTGTGGCTGCCGTTTCTGCTGCAAGATCGTCGAGCTCTTTG 232219
Query 78870 GTTGTGACCCCATTATATAGTCCTTGAATAACTTT 78904
||||| |||||| ||| || |||||||| |||||
Sbjct 232220 GTTGTAACCCCAGCATAAAGGCCTTGAATCACTTT 232254
>seq19464
Length=44290
Score = 165 bits (182), Expect = 1e-35
Identities = 442/673 (66%), Gaps = 11/673 (2%)
Strand=Plus/Plus
Query 47825 ATCTTCTTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATT 47884
||||| | || |||||| ||| ||| || |||||||| || ||||| || || |||||
Sbjct 12010 ATCTTTGTTAGCCATAACACCCGCTTTCTGGTATTCACCAACGCGTTTTTCAAAGAAATT 12069
Query 47885 AGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAt 47944
||||||||||| | || || | |||||||| || || ||||| | || | |
Sbjct 12070 CGTTTTGCCTTCGAGGGAAATTTGCTCCATAAAGTCGAACGGATTCGTGGACTTCCATAG 12129
Query 47945 ttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCAT 48004
|| | | | || | ||| | ||| |||||||| || || ||||| |||||
Sbjct 12130 CTTCTGGCAGTTGAGCTCGATGAGCAGACGATCAGCAACGAACTCAATGTATCTCTTCAT 12189
Query 48005 CATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTC 48064
|| || || ||||| || | | || |||| || || || ||||| ||||||||
Sbjct 12190 CAGATCGCAGTTCATACCCAACATAGCGACAGGTAATGCTTCAGTGAGAAATTCTTGTTC 12249
Query 48065 GATAGTGACAGCATCCACTATTATCGATGTTACCGTTT----CCTCACTTGGTGGATACA 48120
||| | ||||| ||| ||| ||| | | | || | || |||||| | |
Sbjct 12250 GATGGCAACAGCGTCC----TTAATGATTTGATAGATTCGCGCTTCGCTTGGTTTGTTGA 12305
Query 48121 ACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTA 48180
|| ||||| ||||| | ||| || || || || | |||||| || | || |
Sbjct 12306 TCAGGTGTTTGAACATCAGACAGGCGAAGTCTGTGTGCATACCTTCGTCACGTGAGATGA 12365
Query 48181 ATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCG 48240
|| || || ||||| || ||||| | || || ||||| ||||| || || || |
Sbjct 12366 GCTCATTGCTGAAGGTGAGGCCAGGCATGATACCTCGCTTTTTCAGCCAGAAAATAGCGG 12425
Query 48241 CGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGT 48300
| || | || || || |||||||| || || || ||||| || | ||| ||||
Sbjct 12426 CAAACGCCCCGCTGAAAAAAATGCCTTCGACTGCAGCGAATGCCACAACACGCTCACCGT 12485
Query 48301 A-ACTGGCT--TCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAG 48357
| | | || ||||| |||||| | |||||||||||||||||||| | || |
Sbjct 12486 ACGCAGCCTCCTCGTTAGCGATCCACTCTAAGGCCCAATCAGCCTTCTTCTTAATGCATG 12545
Query 48358 GCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTAT 48417
||||||| || || || ||||| | ||| || || | | ||| || |
Sbjct 12546 GCATTGTCTCAATTGCGCGGAAGAGTCGATCACGTTCCGTGGACTCGGTGATGTATGTGT 12605
Query 48418 CTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAA 48477
|| | |||| ||||||||| || ||||||||||| || |||||||| ||||| |
Sbjct 12606 TTAGCAGAAGAGAATACATTTCTGAATGAATATTTTCCATCATTATCTGAAAACCGTAGA 12665
Query 48478 AACATCTCGCTTC 48490
|||| | ||| ||
Sbjct 12666 AACAACGCGCCTC 12678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694491242654720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |