Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq19563 443 3e-119 seq19464 165 1e-35 >seq19563 Length=274849 Score = 443 bits (490), Expect = 3e-119 Identities = 1004/1498 (67%), Gaps = 20/1498 (1%) Strand=Plus/Plus Query 76760 CTTTATTTTATTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAG 76819 ||| || || |||| || | || |||||||| | || ||| || || ||||| || Sbjct 229882 CTTGATCTTCGTCTTGTCTACAGTGAACTGAATCGCTTGAGCTGCAGGCTTCGTACGCAG 229941 Query 76820 ATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTT 76879 |||||||| || || || ||||| || |||| || ||||| ||||| || | || Sbjct 229942 GTAGTACATTCCGGTCTTGAGACCAAGTTTCCAGCCATAGAAGTGCATCGAGGTTAACTT 230001 Query 76880 GGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCC 76939 | |||| | | || |||| ||| | ||| | || ||||| ||||||||||| ||||| Sbjct 230002 GCCATAATTGGTTTCAGCTAGATGGACATTTAGTGATTGACTCTGATCGATGAAGGCTCC 230061 Query 76940 TCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAAC 76999 | |||||| ||||| || || || | || || || || ||||| | || | | | Sbjct 230062 ACGATCAGCAGCCATCTTGATGATATTTTTCTGTGGTATCTCCCATACGGTACGGTAGAG 230121 Query 77000 TTGTTTGATATCATCTGGAAGGTTTGTATTTTGAATGGAACCACCATCTGATATAATTGT 77059 || | | | ||||| || | || | || ||| || | | | Sbjct 230122 CAACTTAAGGTTTTTTGGAATGTCAAGCCTCTGGACTGACCCATTATAAGCAACCA---- 230177 Query 77060 ATTCTTTAT--ATCA--TCATTCCACAATTTCCTC--TCTGTTAAAACTCTAAGGAGATG 77113 |||| || ||| |||||||| | | ||| ||||||| | || |||| ||||| Sbjct 230178 ATTCGTTGCGCATCGACTCATTCCAAAGT--CCTAATTCTGTTAGATCTTTAAGTAGATG 230235 Query 77114 AGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATA 77173 | |||| || | |||||| || || || || |||| ||| | ||| || || ||||| Sbjct 230236 ATGATTGACCACTTGAAACTCACCTGATAACACTCGACGTGAGTACGCGTTGCTCGTATA 230295 Query 77174 TGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGC 77233 |||||| | ||||||||||| || | ||| || || || || ||||| ||||||||||| Sbjct 230296 TGGTTCTATGGATTCATTGTTGCCAAGAATCTGGGCGGTCGATGCAGTGGGCATAGGTGC 230355 Query 77234 CACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATC 77293 || | | ||||| | | ||||| | | || ||| ||||||| ||| || Sbjct 230356 CAATAGGAGGCTATTGCGCACACCATATTTAGCAATCTTAGCTTTTAGCGCGGCCCAGTC 230415 Query 77294 CCAAAGAT--CTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCA 77351 ||||||| ||| || || |||| | ||| ||||| | || || ||| || Sbjct 230416 CCAAAGAGAACTGGGAGTG--ACGCCCCACATATCATATTGCAATATACCTTTAGATACA 230473 Query 77352 TATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCC 77411 || || | || |||||||| | ||||| | || | ||||| || |||||| Sbjct 230474 GGCGAACCCTCGTAAGTTTCATACGTGCCTTCCACCTTCGCAATATCACAGCTTGCTTCC 230533 Query 77412 AATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTA 77471 || || ||||| || || || || || || || || || || |||||| ||| Sbjct 230534 AAAGCGCCGTAGTAGATAGTCTCAAAGATTAGTTTGTTAAGTTCCATTGCTTCGGGACTG 230593 Query 77472 TCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATA 77531 |||||||| || | || | || || | || || | || || |||||||| ||||| Sbjct 230594 TCAAACGGTAAACGCAATATGATGAAAGTGTCGGCAAGCCCTTGGACTCCAATTCCAATC 230653 Query 77532 GGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATA 77591 |||| ||| | |||||| | | |||||||||| ||||| || |||| || ||| Sbjct 230654 GGTCGATGACGTTTATTGCTATGCTCTGCTTCTGGAACTGGATAGTAGTTAACATCGATA 230713 Query 77592 ATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAAT 77651 || || ||||| |||| || |||||| || || || ||||| ||| ||||| Sbjct 230714 ATCTTGTTGAGGTTTCGTGTCACAACTTTAGTAACCTCTTTGAGTTTTCCAAAGTCAAAC 230773 Query 77652 CTTCCATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCA 77711 | || || | ||||| || | || | || || || || |||||||| | ||| Sbjct 230774 TTGCCTTCATTGACAAAGCGATTGAGTGCGAGTGACGCAAGGTTGCAAACTGCGATTTCA 230833 Query 77712 TTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGA 77771 | || || ||| | ||||| || ||||||| |||| || ||||| || || ||| Sbjct 230834 TCAGGAGAGGAATACTCGATTATTTCCGTACATAAATTAGAGCACTTGATTGTTCCAAGA 230893 Query 77772 TTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTT 77831 ||||| || |||||||||| || || | || ||||| | || | || || || ||| Sbjct 230894 TTTTGCTGATTGCTCTTTTGGTTACAAGCATCTTTATATAAGATGTAAGGTGTGCCTGTT 230953 Query 77832 TCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAG-CTTTTATCATAGATTTGTA 77890 ||||| || ||||| ||| | | ||| | | ||| | ||| || | || | Sbjct 230954 TCAATTTGACTTTCGAGAATGGCATACCAAA-GTTTCTGGGCTTCTACCTGGCGCATGAA 231012 Query 77891 TCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATC 77950 || | ||| | ||||||||| || || ||| || || | ||||||| || Sbjct 231013 GCGGCCCTCGCGTTCATATTGCTCGTAGAGTTTTTCGAACTCCTTTCCCCAACAGTCGCT 231072 Query 77951 CAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTT 78010 || || || |||| ||| | ||||||||| ||||| | |||| ||||| ||||| Sbjct 231073 CAGCCCCGGACATTGATTGGAGCACATCAAAGACCACTGGCCATTTTCCTCGACTCGACG 231132 Query 78011 CATAAAGAGATCAGGTATCCATAGAGCAATA-AATAGATCTCGGGTTCTATGTTCTTCAT 78069 |||||| || ||||||| ||| || || ||| || ||||| || | ||| ||||||||| Sbjct 231133 CATAAACAGGTCAGGTACCCAAAG-GCCATAGAAAAGATCACGAGCTCTGTGTTCTTCAA 231191 Query 78070 TTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGAT 78129 | || |||||||| | |||||| || || | ||||| | |||||||||||| | || Sbjct 231192 TACCAGTATTCTTGCGCAAATCGAGGAATTCAAAGATATCGGCATGCCATGGTTCCAAAT 231251 Query 78130 ATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTAT 78189 | || || | | | || || | |||||||||||||| || | ||||| || ||||||| Sbjct 231252 AGATCGCAAAAGCACCCGGCCTCTTATTACCTCCCTGGTCAACATATCGCGCTGTGTTAT 231311 Query 78190 TATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATA 78247 | || || | | |||||| | ||| || || |||||||| || || || | ||||| Sbjct 231312 TGTACACACGAAGCATTGGCACAATGCCATTCGATGTTCCGTTAGTGCCTGCTATATA 231369 Score = 102 bits (112), Expect = 1e-16 Identities = 337/515 (65%), Gaps = 18/515 (3%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || || ||||| || ||||| ||||| |||||| | ||||| Sbjct 231749 GTGCCGGCATTGAACAACGTCGGGCTGGCGTGCGTGAACCACTTTTCACTCATCAGATTA 231808 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGA--TGAATTCCTACCGCTACACGCATCA 78516 |||||||| || || | || ||||| | || ||||| || || ||||||||||| | Sbjct 231809 TATGTTTCTATGGCAGCGTCGATGTC--AGTGCCGTGAATACCAACAGCTACACGCATGA 231866 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||| || || |||| |||||| || || ||||| | || ||||| |||| Sbjct 231867 GCATGTGTTGTGGTCGCTCAACCACTTTTCCATCAATTTTAAGCAGATATGAGCGCTCCA 231926 Query 78577 AAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTCTCGTAAATAATAACAGAATT 78634 | || ||| || ||||| ||||| ||||| || | | ||| | ||| ||| || Sbjct 231927 ATGTACGAAAGCCGAAATAATTGTAGTTGAAA--TCACGATTGTAGACGATAGCAGCATC 231984 Query 78635 TAGTTTATCTTTGTATTTGGTA--ACAATATCCATGACAGTAGTTGAAATAATAGGAGAT 78692 |||| ||||| |||||| || || ||||| ||| |||| || || || | Sbjct 231985 GAGTTCATCTT--TATTTGCTATGACGATATCGTAGACTTCTTTTGAGATCATGGGCATT 232042 Query 78693 CGTACACCATTTT---TAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTAAAT 78749 | ||| ||| | | | ||| || | | ||| || | || ||| Sbjct 232043 GGCTTGCCAGTTTTGCTCTGTGTCACAAAG-CGCAGCATGCTT--ATAATCTCTGAAAAC 232099 Query 78750 AGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAA 78809 | || || || || || || ||||| || | || || | || |||| || ||||| Sbjct 232100 TGCTTCTTAGTCTCTTTATGAAGATTCGAAATTGCAATACGGGCCGCTAAAACCGCATAG 232159 Query 78810 TCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATA 78869 || ||||| || || || |||||||| ||||||| || | | || | |||| | Sbjct 232160 TCCGGATGCTGGGTCGTCATTGTGGCTGCCGTTTCTGCTGCAAGATCGTCGAGCTCTTTG 232219 Query 78870 GTTGTGACCCCATTATATAGTCCTTGAATAACTTT 78904 ||||| |||||| ||| || |||||||| ||||| Sbjct 232220 GTTGTAACCCCAGCATAAAGGCCTTGAATCACTTT 232254 >seq19464 Length=44290 Score = 165 bits (182), Expect = 1e-35 Identities = 442/673 (66%), Gaps = 11/673 (2%) Strand=Plus/Plus Query 47825 ATCTTCTTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATT 47884 ||||| | || |||||| ||| ||| || |||||||| || ||||| || || ||||| Sbjct 12010 ATCTTTGTTAGCCATAACACCCGCTTTCTGGTATTCACCAACGCGTTTTTCAAAGAAATT 12069 Query 47885 AGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAt 47944 ||||||||||| | || || | |||||||| || || ||||| | || | | Sbjct 12070 CGTTTTGCCTTCGAGGGAAATTTGCTCCATAAAGTCGAACGGATTCGTGGACTTCCATAG 12129 Query 47945 ttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCAT 48004 || | | | || | ||| | ||| |||||||| || || ||||| ||||| Sbjct 12130 CTTCTGGCAGTTGAGCTCGATGAGCAGACGATCAGCAACGAACTCAATGTATCTCTTCAT 12189 Query 48005 CATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTC 48064 || || || ||||| || | | || |||| || || || ||||| |||||||| Sbjct 12190 CAGATCGCAGTTCATACCCAACATAGCGACAGGTAATGCTTCAGTGAGAAATTCTTGTTC 12249 Query 48065 GATAGTGACAGCATCCACTATTATCGATGTTACCGTTT----CCTCACTTGGTGGATACA 48120 ||| | ||||| ||| ||| ||| | | | || | || |||||| | | Sbjct 12250 GATGGCAACAGCGTCC----TTAATGATTTGATAGATTCGCGCTTCGCTTGGTTTGTTGA 12305 Query 48121 ACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTA 48180 || ||||| ||||| | ||| || || || || | |||||| || | || | Sbjct 12306 TCAGGTGTTTGAACATCAGACAGGCGAAGTCTGTGTGCATACCTTCGTCACGTGAGATGA 12365 Query 48181 ATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCG 48240 || || || ||||| || ||||| | || || ||||| ||||| || || || | Sbjct 12366 GCTCATTGCTGAAGGTGAGGCCAGGCATGATACCTCGCTTTTTCAGCCAGAAAATAGCGG 12425 Query 48241 CGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGT 48300 | || | || || || |||||||| || || || ||||| || | ||| |||| Sbjct 12426 CAAACGCCCCGCTGAAAAAAATGCCTTCGACTGCAGCGAATGCCACAACACGCTCACCGT 12485 Query 48301 A-ACTGGCT--TCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAG 48357 | | | || ||||| |||||| | |||||||||||||||||||| | || | Sbjct 12486 ACGCAGCCTCCTCGTTAGCGATCCACTCTAAGGCCCAATCAGCCTTCTTCTTAATGCATG 12545 Query 48358 GCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTAT 48417 ||||||| || || || ||||| | ||| || || | | ||| || | Sbjct 12546 GCATTGTCTCAATTGCGCGGAAGAGTCGATCACGTTCCGTGGACTCGGTGATGTATGTGT 12605 Query 48418 CTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAA 48477 || | |||| ||||||||| || ||||||||||| || |||||||| ||||| | Sbjct 12606 TTAGCAGAAGAGAATACATTTCTGAATGAATATTTTCCATCATTATCTGAAAACCGTAGA 12665 Query 48478 AACATCTCGCTTC 48490 |||| | ||| || Sbjct 12666 AACAACGCGCCTC 12678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694491242654720