Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq19563 470 2e-127
seq19464 176 6e-39
>seq19563
Length=274849
Score = 470 bits (520), Expect = 2e-127
Identities = 1014/1499 (68%), Gaps = 22/1499 (1%)
Strand=Plus/Plus
Query 75355 CTTTATTTTATTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAG 75414
||| || || |||| || | ||||||||||| | | ||| || || ||||| ||
Sbjct 229882 CTTGATCTTCGTCTTGTCTACAGTGAACTGAATCGCTTGAGCTGCAGGCTTCGTACGCAG 229941
Query 75415 ATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTT 75474
|||||||| || || || ||||| || |||| || ||||| ||||| |||| ||
Sbjct 229942 GTAGTACATTCCGGTCTTGAGACCAAGTTTCCAGCCATAGAAGTGCATCGAGGTTAACTT 230001
Query 75475 GGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCC 75534
| |||| | | || |||| ||| | ||| | || ||||| ||||||||||| |||||
Sbjct 230002 GCCATAATTGGTTTCAGCTAGATGGACATTTAGTGATTGACTCTGATCGATGAAGGCTCC 230061
Query 75535 TCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAAC 75594
| |||||| ||||| || || || | || || || || ||||| | || | | |
Sbjct 230062 ACGATCAGCAGCCATCTTGATGATATTTTTCTGTGGTATCTCCCATACGGTACGGTAGAG 230121
Query 75595 TTGTTTGATATCATCTGGAAGATTTGTATTTTGAATGGATCCGCCATCAGATATAATTGT 75654
|| | | | ||||| | | || | || || || || | |
Sbjct 230122 CAACTTAAGGTTTTTTGGAATGTCAAGCCTCTGGACTGACCCATTATAAGCAACCA---- 230177
Query 75655 ATTC-TTG---ATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAG 75710
|||| ||| ||| |||||||| | | | || |||| | || |||| ||||||
Sbjct 230178 ATTCGTTGCGCATCGACTCATTCCAAAGTCCTAATTCTGTTAGATCTTTAAGTAGATGAT 230237
Query 75711 GATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATG 75770
|||| || | |||||| || || || || |||| || | ||| || || |||||||
Sbjct 230238 GATTGACCACTTGAAACTCACCTGATAACACTCGACGTGAGTACGCGTTGCTCGTATATG 230297
Query 75771 GTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCA 75830
|||| | ||||||||||| || | ||| || || || || ||||| |||||||||||||
Sbjct 230298 GTTCTATGGATTCATTGTTGCCAAGAATCTGGGCGGTCGATGCAGTGGGCATAGGTGCCA 230357
Query 75831 CCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCC 75890
| | ||||| | | ||||| | | || ||| ||||||| ||| ||||
Sbjct 230358 ATAGGAGGCTATTGCGCACACCATATTTAGCAATCTTAGCTTTTAGCGCGGCCCAGTCCC 230417
Query 75891 AAAGAT--CTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTT-GCTAGCAT 75947
||||| ||| || || |||| | ||| ||||| | || || || | || ||
Sbjct 230418 AAAGAGAACTGGGAGTG--ACGCCCCACATATCATATTGCAATATACCTTTAGATA-CAG 230474
Query 75948 ATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTA 76007
|| || | || ||||| || || || ||| | || | || || || || || |
Sbjct 230475 GCGAACCCTCGTAAGTTTCATACGTGCCTTCCACCTTCGCAATATCACAGCTTGCTTCCA 230534
Query 76008 ACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTAT 76067
| || ||||| || || || || || || || ||||| || ||||| |||| |
Sbjct 230535 AAGCGCCGTAGTAGATAGTCTCAAAGATTAGTTTGTTAAGTTCCATTGCTTCGGGACTGT 230594
Query 76068 CAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAG 76127
|||| || || | || | || || | || || || || || |||||||| ||||| |
Sbjct 230595 CAAACGGTAAACGCAATATGATGAAAGTGTCGGCAAGCCCTTGGACTCCAATTCCAATCG 230654
Query 76128 GTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAA 76187
||| ||| | |||||| | || |||||||||| || || || |||| ||| ||||
Sbjct 230655 GTCGATGACGTTTATTGCTATGCTCTGCTTCTGGAACTGGATAGTAGTTAACATCGATAA 230714
Query 76188 TTTTATTGAGATTTC-TGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAAT 76246
| || ||||| |||| || || | |||||| || || || ||||| ||| |||||
Sbjct 230715 TCTTGTTGAGGTTTCGTGTCA-CAACTTTAGTAACCTCTTTGAGTTTTCCAAAGTCAAAC 230773
Query 76247 TTTCCATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCA 76306
|| || || | ||||| ||| || || | || || || || ||||| || | |||
Sbjct 230774 TTGCCTTCATTGACAAAGCGATTGAGTGCGAGTGACGCAAGGTTGCAAACTGCGATTTCA 230833
Query 76307 TTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGA 76366
| || | || ||| | ||||| ||||| |||| |||| |||||||| |||||||||
Sbjct 230834 TCAGGAGAGGAATACTCGATTATTTCCGTACATAAATTAGAGCACTTGATTGTTCCAAGA 230893
Query 76367 TTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATA-AAGAACAAACGGAGTTCCAGT 76425
||||| || |||||||||| |||||| | || ||||| |||| || || || || ||
Sbjct 230894 TTTTGCTGATTGCTCTTTTGGTTACAAGCATCTTTATATAAGATGTAA-GGTGTGCCTGT 230952
Query 76426 TTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATTATAGATTTGT 76484
|||||| || ||||| ||| | | ||| | | ||| |||| || ||
Sbjct 230953 TTCAATTTGACTTTCGAGAATGGCATACCA-AAGTTTCTGGGCTTCTACCTGGCGCATGA 231011
Query 76485 ATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCAT 76544
| || ||| | ||||||||| || | ||| || || | ||||||| ||
Sbjct 231012 AGCGGCCCTCGCGTTCATATTGCTCGTAGAGTTTTTCGAACTCCTTTCCCCAACAGTCGC 231071
Query 76545 CCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTT 76604
|| || ||||||| ||| | |||||||| ||||||| |||| ||||| || ||
Sbjct 231072 TCAGCCCCGGACATTGATTGGAGCACATCAAAGACCACTGGCCATTTTCCTCGACTCGAC 231131
Query 76605 TCATAAAGAGATCAGGTATCCATAGAGCAATA-AATAGATCTCGGGTTCTACGTTCTTCA 76663
|||||| || ||||||| ||| || || ||| || ||||| || | ||| ||||||||
Sbjct 231132 GCATAAACAGGTCAGGTACCCAAAG-GCCATAGAAAAGATCACGAGCTCTGTGTTCTTCA 231190
Query 76664 TTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGA 76723
| || |||||||| | ||| ||||| || | ||||| | |||||||||||| | |
Sbjct 231191 ATACCAGTATTCTTGCGCAAATCGAGGAATTCAAAGATATCGGCATGCCATGGTTCCAAA 231250
Query 76724 TATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTA 76783
|| ||||| | | ||||||| | |||||||||||||| || | ||||| || ||||||
Sbjct 231251 TAGATCGCAAAAGCACCCGGCCTCTTATTACCTCCCTGGTCAACATATCGCGCTGTGTTA 231310
Query 76784 TTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATA 76842
|| || || | | |||||| | |||||| || ||||| || || || || | |||||
Sbjct 231311 TTGTACACACGAAGCATTGGCACAATGCCATTCGATGTTCCGTTAGTGCCTGCTATATA 231369
>seq19464
Length=44290
Score = 176 bits (194), Expect = 6e-39
Identities = 431/652 (66%), Gaps = 11/652 (2%)
Strand=Plus/Plus
Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385
|||||| ||| ||| ||||||||||| || ||||| || || ||||| |||||||||||
Sbjct 12022 CATAACACCCGCTTTCTGGTATTCACCAACGCGTTTTTCAAAGAAATTCGTTTTGCCTTC 12081
Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCC 46445
| || || | |||||||| || |||||||| || || | | || | |
Sbjct 12082 GAGGGAAATTTGCTCCATAAAGTCGAACGGATTCGTGGACTTCCATAGCTTCTGGCAGTT 12141
Query 46446 TAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATT 46505
| || | ||| | ||| |||||||| || || || | ||||||| || || ||
Sbjct 12142 GAGCTCGATGAGCAGACGATCAGCAACGAACTCAATGTATCTCTTCATCAGATCGCAGTT 12201
Query 46506 CATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGC 46565
||| || | | ||| |||| || || || ||||| |||||||| || | |||||
Sbjct 12202 CATACCCAACATAGCGACAGGTAATGCTTCAGTGAGAAATTCTTGTTCGATGGCAACAGC 12261
Query 46566 ATCCGATATTATCGATGTTACTGTTTCC----TCACTTGGTGGATGCATCAAATGTTTAA 46621
||| ||| ||| | | | ||| || |||||| | |||| ||||| |
Sbjct 12262 GTCC----TTAATGATTTGATAGATTCGCGCTTCGCTTGGTTTGTTGATCAGGTGTTTGA 12317
Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681
|||| | ||| || || || || | ||||| || | || | || || |
Sbjct 12318 ACATCAGACAGGCGAAGTCTGTGTGCATACCTTCGTCACGTGAGATGAGCTCATTGCTGA 12377
Query 46682 ATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741
| ||||| |||||||| | || |||||||| ||||| || ||||| || || | ||
Sbjct 12378 AGGTGAGGCCAGGCATGATACCTCGCTTTTTCAGCCAGAAAATAGCGGCAAACGCCCCGC 12437
Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCAT 46801
|| || |||||||| || || |||||||| |||| | ||| ||||| || || |
Sbjct 12438 TGAAAAAAATGCCTTCGACTGCAGCGAATGCCACAACACGCTCACCGTACGCAGCCTCCT 12497
Query 46802 TATGA---ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTA 46858
| | |||||| | |||||||||||||| ||||| | || |||||||| || |
Sbjct 12498 CGTTAGCGATCCACTCTAAGGCCCAATCAGCCTTCTTCTTAATGCATGGCATTGTCTCAA 12557
Query 46859 TAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGAC 46918
| || ||||| | ||| || | | ||||| | || | ||||
Sbjct 12558 TTGCGCGGAAGAGTCGATCACGTTCCGTGGACTCGGTGATGTATGTGTTTAGCAGAAGAG 12617
Query 46919 TATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACA 46970
|||||||||||||||||| ||||| || |||||||| ||||| |||||
Sbjct 12618 AATACATTTCTGAATGAATATTTTCCATCATTATCTGAAAACCGTAGAAACA 12669
Score = 86.0 bits (94), Expect = 9e-12
Identities = 149/215 (69%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 47012 ACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATA 47070
|||| |||||| ||||| || |||||| |||||||||||| || | | ||||| ||
Sbjct 13047 ACAAGATTCTCGTTCACAATGCCATCAGAAGCAGCAAAAAACGCAAGAATGTGTTTGATG 13106
Query 47071 AAATATTTTTCATCGGTAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCT 47127
|| | | || | | ||| | || ||||||||| || || || | |||
Sbjct 13107 AATTCTCGCTCCTGAGGTTTCATTCGGTTCTTCCAGTCAGACATGTCCTTGCCCAAATCG 13166
Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGA 47187
|| || ||||| ||||| || || |||| ||| ||||| ||||| | ||| || || |
Sbjct 13167 ACCTCCTCAGCGGTCCAAAAAGAGGCCTGTGCCTTTTTGTACATTTGCCAAATGTCGGAA 13226
Query 47188 TATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222
|||| || ||||||| ||||| | ||| || ||
Sbjct 13227 TATTCAATGGGAAAAAGCACAAAACGATTGGGGTT 13261
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712752173967360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |