Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq19563 470 2e-127 seq19464 176 6e-39 >seq19563 Length=274849 Score = 470 bits (520), Expect = 2e-127 Identities = 1014/1499 (68%), Gaps = 22/1499 (1%) Strand=Plus/Plus Query 75355 CTTTATTTTATTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAG 75414 ||| || || |||| || | ||||||||||| | | ||| || || ||||| || Sbjct 229882 CTTGATCTTCGTCTTGTCTACAGTGAACTGAATCGCTTGAGCTGCAGGCTTCGTACGCAG 229941 Query 75415 ATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTT 75474 |||||||| || || || ||||| || |||| || ||||| ||||| |||| || Sbjct 229942 GTAGTACATTCCGGTCTTGAGACCAAGTTTCCAGCCATAGAAGTGCATCGAGGTTAACTT 230001 Query 75475 GGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCC 75534 | |||| | | || |||| ||| | ||| | || ||||| ||||||||||| ||||| Sbjct 230002 GCCATAATTGGTTTCAGCTAGATGGACATTTAGTGATTGACTCTGATCGATGAAGGCTCC 230061 Query 75535 TCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAAC 75594 | |||||| ||||| || || || | || || || || ||||| | || | | | Sbjct 230062 ACGATCAGCAGCCATCTTGATGATATTTTTCTGTGGTATCTCCCATACGGTACGGTAGAG 230121 Query 75595 TTGTTTGATATCATCTGGAAGATTTGTATTTTGAATGGATCCGCCATCAGATATAATTGT 75654 || | | | ||||| | | || | || || || || | | Sbjct 230122 CAACTTAAGGTTTTTTGGAATGTCAAGCCTCTGGACTGACCCATTATAAGCAACCA---- 230177 Query 75655 ATTC-TTG---ATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAG 75710 |||| ||| ||| |||||||| | | | || |||| | || |||| |||||| Sbjct 230178 ATTCGTTGCGCATCGACTCATTCCAAAGTCCTAATTCTGTTAGATCTTTAAGTAGATGAT 230237 Query 75711 GATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATG 75770 |||| || | |||||| || || || || |||| || | ||| || || ||||||| Sbjct 230238 GATTGACCACTTGAAACTCACCTGATAACACTCGACGTGAGTACGCGTTGCTCGTATATG 230297 Query 75771 GTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCA 75830 |||| | ||||||||||| || | ||| || || || || ||||| ||||||||||||| Sbjct 230298 GTTCTATGGATTCATTGTTGCCAAGAATCTGGGCGGTCGATGCAGTGGGCATAGGTGCCA 230357 Query 75831 CCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCC 75890 | | ||||| | | ||||| | | || ||| ||||||| ||| |||| Sbjct 230358 ATAGGAGGCTATTGCGCACACCATATTTAGCAATCTTAGCTTTTAGCGCGGCCCAGTCCC 230417 Query 75891 AAAGAT--CTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTT-GCTAGCAT 75947 ||||| ||| || || |||| | ||| ||||| | || || || | || || Sbjct 230418 AAAGAGAACTGGGAGTG--ACGCCCCACATATCATATTGCAATATACCTTTAGATA-CAG 230474 Query 75948 ATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTA 76007 || || | || ||||| || || || ||| | || | || || || || || | Sbjct 230475 GCGAACCCTCGTAAGTTTCATACGTGCCTTCCACCTTCGCAATATCACAGCTTGCTTCCA 230534 Query 76008 ACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTAT 76067 | || ||||| || || || || || || || ||||| || ||||| |||| | Sbjct 230535 AAGCGCCGTAGTAGATAGTCTCAAAGATTAGTTTGTTAAGTTCCATTGCTTCGGGACTGT 230594 Query 76068 CAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAG 76127 |||| || || | || | || || | || || || || || |||||||| ||||| | Sbjct 230595 CAAACGGTAAACGCAATATGATGAAAGTGTCGGCAAGCCCTTGGACTCCAATTCCAATCG 230654 Query 76128 GTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAA 76187 ||| ||| | |||||| | || |||||||||| || || || |||| ||| |||| Sbjct 230655 GTCGATGACGTTTATTGCTATGCTCTGCTTCTGGAACTGGATAGTAGTTAACATCGATAA 230714 Query 76188 TTTTATTGAGATTTC-TGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAAT 76246 | || ||||| |||| || || | |||||| || || || ||||| ||| ||||| Sbjct 230715 TCTTGTTGAGGTTTCGTGTCA-CAACTTTAGTAACCTCTTTGAGTTTTCCAAAGTCAAAC 230773 Query 76247 TTTCCATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCA 76306 || || || | ||||| ||| || || | || || || || ||||| || | ||| Sbjct 230774 TTGCCTTCATTGACAAAGCGATTGAGTGCGAGTGACGCAAGGTTGCAAACTGCGATTTCA 230833 Query 76307 TTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGA 76366 | || | || ||| | ||||| ||||| |||| |||| |||||||| ||||||||| Sbjct 230834 TCAGGAGAGGAATACTCGATTATTTCCGTACATAAATTAGAGCACTTGATTGTTCCAAGA 230893 Query 76367 TTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATA-AAGAACAAACGGAGTTCCAGT 76425 ||||| || |||||||||| |||||| | || ||||| |||| || || || || || Sbjct 230894 TTTTGCTGATTGCTCTTTTGGTTACAAGCATCTTTATATAAGATGTAA-GGTGTGCCTGT 230952 Query 76426 TTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATTATAGATTTGT 76484 |||||| || ||||| ||| | | ||| | | ||| |||| || || Sbjct 230953 TTCAATTTGACTTTCGAGAATGGCATACCA-AAGTTTCTGGGCTTCTACCTGGCGCATGA 231011 Query 76485 ATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCAT 76544 | || ||| | ||||||||| || | ||| || || | ||||||| || Sbjct 231012 AGCGGCCCTCGCGTTCATATTGCTCGTAGAGTTTTTCGAACTCCTTTCCCCAACAGTCGC 231071 Query 76545 CCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTT 76604 || || ||||||| ||| | |||||||| ||||||| |||| ||||| || || Sbjct 231072 TCAGCCCCGGACATTGATTGGAGCACATCAAAGACCACTGGCCATTTTCCTCGACTCGAC 231131 Query 76605 TCATAAAGAGATCAGGTATCCATAGAGCAATA-AATAGATCTCGGGTTCTACGTTCTTCA 76663 |||||| || ||||||| ||| || || ||| || ||||| || | ||| |||||||| Sbjct 231132 GCATAAACAGGTCAGGTACCCAAAG-GCCATAGAAAAGATCACGAGCTCTGTGTTCTTCA 231190 Query 76664 TTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGA 76723 | || |||||||| | ||| ||||| || | ||||| | |||||||||||| | | Sbjct 231191 ATACCAGTATTCTTGCGCAAATCGAGGAATTCAAAGATATCGGCATGCCATGGTTCCAAA 231250 Query 76724 TATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTA 76783 || ||||| | | ||||||| | |||||||||||||| || | ||||| || |||||| Sbjct 231251 TAGATCGCAAAAGCACCCGGCCTCTTATTACCTCCCTGGTCAACATATCGCGCTGTGTTA 231310 Query 76784 TTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATA 76842 || || || | | |||||| | |||||| || ||||| || || || || | ||||| Sbjct 231311 TTGTACACACGAAGCATTGGCACAATGCCATTCGATGTTCCGTTAGTGCCTGCTATATA 231369 >seq19464 Length=44290 Score = 176 bits (194), Expect = 6e-39 Identities = 431/652 (66%), Gaps = 11/652 (2%) Strand=Plus/Plus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 |||||| ||| ||| ||||||||||| || ||||| || || ||||| ||||||||||| Sbjct 12022 CATAACACCCGCTTTCTGGTATTCACCAACGCGTTTTTCAAAGAAATTCGTTTTGCCTTC 12081 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCC 46445 | || || | |||||||| || |||||||| || || | | || | | Sbjct 12082 GAGGGAAATTTGCTCCATAAAGTCGAACGGATTCGTGGACTTCCATAGCTTCTGGCAGTT 12141 Query 46446 TAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATT 46505 | || | ||| | ||| |||||||| || || || | ||||||| || || || Sbjct 12142 GAGCTCGATGAGCAGACGATCAGCAACGAACTCAATGTATCTCTTCATCAGATCGCAGTT 12201 Query 46506 CATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGC 46565 ||| || | | ||| |||| || || || ||||| |||||||| || | ||||| Sbjct 12202 CATACCCAACATAGCGACAGGTAATGCTTCAGTGAGAAATTCTTGTTCGATGGCAACAGC 12261 Query 46566 ATCCGATATTATCGATGTTACTGTTTCC----TCACTTGGTGGATGCATCAAATGTTTAA 46621 ||| ||| ||| | | | ||| || |||||| | |||| ||||| | Sbjct 12262 GTCC----TTAATGATTTGATAGATTCGCGCTTCGCTTGGTTTGTTGATCAGGTGTTTGA 12317 Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681 |||| | ||| || || || || | ||||| || | || | || || | Sbjct 12318 ACATCAGACAGGCGAAGTCTGTGTGCATACCTTCGTCACGTGAGATGAGCTCATTGCTGA 12377 Query 46682 ATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 | ||||| |||||||| | || |||||||| ||||| || ||||| || || | || Sbjct 12378 AGGTGAGGCCAGGCATGATACCTCGCTTTTTCAGCCAGAAAATAGCGGCAAACGCCCCGC 12437 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCAT 46801 || || |||||||| || || |||||||| |||| | ||| ||||| || || | Sbjct 12438 TGAAAAAAATGCCTTCGACTGCAGCGAATGCCACAACACGCTCACCGTACGCAGCCTCCT 12497 Query 46802 TATGA---ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTA 46858 | | |||||| | |||||||||||||| ||||| | || |||||||| || | Sbjct 12498 CGTTAGCGATCCACTCTAAGGCCCAATCAGCCTTCTTCTTAATGCATGGCATTGTCTCAA 12557 Query 46859 TAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGAC 46918 | || ||||| | ||| || | | ||||| | || | |||| Sbjct 12558 TTGCGCGGAAGAGTCGATCACGTTCCGTGGACTCGGTGATGTATGTGTTTAGCAGAAGAG 12617 Query 46919 TATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACA 46970 |||||||||||||||||| ||||| || |||||||| ||||| ||||| Sbjct 12618 AATACATTTCTGAATGAATATTTTCCATCATTATCTGAAAACCGTAGAAACA 12669 Score = 86.0 bits (94), Expect = 9e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 47012 ACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATA 47070 |||| |||||| ||||| || |||||| |||||||||||| || | | ||||| || Sbjct 13047 ACAAGATTCTCGTTCACAATGCCATCAGAAGCAGCAAAAAACGCAAGAATGTGTTTGATG 13106 Query 47071 AAATATTTTTCATCGGTAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCT 47127 || | | || | | ||| | || ||||||||| || || || | ||| Sbjct 13107 AATTCTCGCTCCTGAGGTTTCATTCGGTTCTTCCAGTCAGACATGTCCTTGCCCAAATCG 13166 Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGA 47187 || || ||||| ||||| || || |||| ||| ||||| ||||| | ||| || || | Sbjct 13167 ACCTCCTCAGCGGTCCAAAAAGAGGCCTGTGCCTTTTTGTACATTTGCCAAATGTCGGAA 13226 Query 47188 TATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222 |||| || ||||||| ||||| | ||| || || Sbjct 13227 TATTCAATGGGAAAAAGCACAAAACGATTGGGGTT 13261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712752173967360