Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_031230.1 Length=98136 Score E Sequences producing significant alignments: (Bits) Value seq19061 127 1e-24 >seq19061 Length=15585 Score = 127 bits (140), Expect = 1e-24 Identities = 233/341 (68%), Gaps = 3/341 (1%) Strand=Plus/Minus Query 74554 GAGTTGAGGTTCACTCCGAGTGGGGTTGCGGTAGCCAATTTCACTGTGGTGTCAAATCCC 74613 ||| || ||||||| |||| || | || || || || ||||| || | ||| | || Sbjct 14164 GAGCTGCGGTTCACACCGACCGGCGCGGCCGTCGCGAACTTCACCGTCGCGTCGACGCCT 14105 Query 74614 CGGAGATTCGACAAGCAAACGAATTCCTGGATTGACGAGGAGCCATGGTTCGTACGTTGC 74673 |||| |||||| || || || |||| |||| || | |||| | || ||| Sbjct 14104 CGGACCTTCGACCGTCAGACCAACGAGTGGAAGGACGGCGAAGCGCTGTTCTTGCGCTGC 14045 Query 74674 AACATCTGGCGTGACGCGGCCGAGAATGCCGCAGAGTCGCTTGACAAGGGCACTCGAGTG 74733 ||||||||||| || || || ||||| | || |||||||| || |||| | || || Sbjct 14044 AACATCTGGCGCGAGGCCGCGGAGAACGTGGCCGAGTCGCTGACCAGGGGCGCGCGCGTC 13985 Query 74734 ATCGTCCAGGGGCGTCTCAAGTCCCGGTCATATACCACCAACGAAGGCGAGGATCGAACG 74793 ||||| || | |||||| || || || ||| ||| |||||| | || || Sbjct 13984 ATCGTGACCGGCAGGCTCAAGCAGCGCTCGTACGAGACCCGCGAGGGCGAGAAGCGGACC 13925 Query 74794 GTCCTTGAGCTCGAGGTCGATGAGATCGGACCCTCGCTGCAGTGGGCCACTGCTAAGGTT 74853 ||| | |||||||| ||||| |||||||| || || |||| | |||| || || || Sbjct 13924 GTCGTCGAGCTCGAAGTCGACGAGATCGGGCCTTCCCTGCGCTACTCCACCGCGAAAGTG 13865 Query 74854 CAGCGCACCGAACGAGGCGGCGGAAACCGAGGCGGAGGCGG 74894 | ||| ||| || |||||||| | | ||||||||||| Sbjct 13864 AACCGCGCCGCGCGCGGCGGCGGTA---GCGGCGGAGGCGG 13827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313832170389216