Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_031252.1 Length=51290 Score E Sequences producing significant alignments: (Bits) Value seq19061 203 1e-47 >seq19061 Length=15585 Score = 203 bits (224), Expect = 1e-47 Identities = 280/384 (73%), Gaps = 6/384 (2%) Strand=Plus/Minus Query 30898 ATGGCCGGTGAAACAACGATCACAGTGATCGGAAACCTGACGAACGATCCAGAGCTACGG 30957 ||||| || || || ||||| ||| |||| ||| ||||| |||||| ||||| ||| Sbjct 14215 ATGGCAGGCGACACCGTCATCACTGTGGTCGGCAACTTGACGGCCGATCCCGAGCTGCGG 14156 Query 30958 TTCACGCCGTCTGGCAGCGCTGTCGCGAACTTCACGATCGCGAGCACACCGCGAACGTTC 31017 ||||| ||| | ||| || |||||||||||||| ||||| || || || || ||| Sbjct 14155 TTCACACCGACCGGCGCGGCCGTCGCGAACTTCACCGTCGCGTCGACGCCTCGGACCTTC 14096 Query 31018 GATCGACAGTCAAACGAGTGGAAAGACGGCGAGACGCTCTTCCTGCGC-GCTGCTGTCTG 31076 || || ||| | ||||||||||| |||||||| |||| ||| ||||| || | |||| Sbjct 14095 GACCGTCAGACCAACGAGTGGAAGGACGGCGAAGCGCTGTTCTTGCGCTGCAACA-TCTG 14037 Query 31077 GCGCGAGACTGCAGAGAATGTCGCAGAGTCCCTGCAGAAGGGCATGGAGGTCATCTGCGT 31136 ||||||| | || ||||| || || ||||| ||| | |||| | |||||| | | Sbjct 14036 GCGCGAGGCCGCGGAGAACGTGGCCGAGTCGCTGACCAGGGGCGCGCGCGTCATC-GTGA 13978 Query 31137 CGGGC-GTCTGAAGTCGCGCAGCTACGAGACGAAAGAGGGCGAGAAGCGCACTGTCATCG 31195 | ||| | || ||| |||| |||||||| |||||||||||||| || ||| ||| Sbjct 13977 CCGGCAGGCTCAAGCAGCGCTCGTACGAGACCCGCGAGGGCGAGAAGCGGACCGTCGTCG 13918 Query 31196 AGCTCGAAGTCGACAGCATCGGCCCGTCGCTGCGATGGGCGTCTGCGGCGATGAAGCG-G 31254 |||||||||||||| ||||| || || ||||| | | | ||| |||| || | Sbjct 13917 AGCTCGAAGTCGACGAGATCGGGCCTTCCCTGCGCTACTCCACCGCGAAAGTGAACCGCG 13858 Query 31255 CAGCAGCGCGGCAACGGCAGCGGC 31278 | || ||||||| ||| |||||| Sbjct 13857 CCGC-GCGCGGCGGCGGTAGCGGC 13835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163966575965952