Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq7231 147 5e-30 seq19980 145 2e-29 >seq7231 Length=219762 Score = 147 bits (162), Expect = 5e-30 Identities = 167/222 (75%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||||||| || |||||||||||||||||||| || ||||| || || | || ||| | Sbjct 99988 GAGTCTGAGCACCAGATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGATAGAGTACG 100047 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || ||| || || || || |||||||| || || | | ||||||||| Sbjct 100048 ACCATCTTCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGAGGGATTCCTTC 100107 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGA 152063 || || |||||||| ||||| | || | | | | ||| | ||||| || || Sbjct 100108 TTTGTCCTGAATTTTGGCCTTGACGTTTTCAATGGTATCACTGGA--TTCTACCTCGAGT 100165 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||||||||| ||||| ||||||||||| | ||||||| Sbjct 100166 GTGATAGTTTTGCCTGTGAGCGTCTTCACGAAAATCTGCATT 100207 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| || |||||||| || || |||||||||||||| ||||| || | | || | Sbjct 100445 AGTCGAAGAACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTGAAAGGGTACGA 100504 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || ||||| || ||| ||||| ||||| | |||||| || || | | ||| ||||| Sbjct 100505 CCGTCTTCAAGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCT 100564 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| ||||| ||| ||| |||| | |||| || ||| ||||| || ||| Sbjct 100565 TTGTCTTGGATTTTCGCTTTAACATTCTCAATTGTGTCAGAGGGCTCAACTTCCAGGGTA 100624 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || || || |||||||||| |||||| Sbjct 100625 ATAGTCTTTCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| || |||||||| || || |||||||||||||| ||||| || | | ||| | Sbjct 100673 AGTCTAAGTACAAGATGGAGCGTGGACTCTTTTTGGATATTGTAGTCCGAAAGAGTACGT 100732 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || ||||| | ||| || || ||||| | ||||| ||||| | | || || ||| Sbjct 100733 CCGTCTTCCAACTGTTTTCCAGCAAAGATTAATCTCTGTTGGTCTGGGGGAATACCCTCC 100792 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||| ||| |||||| | || | | |||||| || || ||||| || Sbjct 100793 TTGTCTTGAATCTTTGCCTTGACATTTTCGATTGTATCTGAAGATTCCACCTCAAGGGTG 100852 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| || || || || || |||||||| | ||||||| Sbjct 100853 ATAGTCTTACCGGTTAGGGTTTTCACGAAAATCTGCATT 100891 Score = 105 bits (116), Expect = 2e-17 Identities = 160/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 151880 TTACCT--GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCT 151937 |||||| ||| | || || || || || || || ||||| ||||||||||| || | Sbjct 92572 TTACCTCGGAGACGAAGAACGAGGTGGAGCGTTGATTCTTTCTGGATGTTGTAGTCTGAC 92631 Query 151938 AAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAG 151997 | ||||| || || || || ||| || || ||||| | | ||||||||| | || | Sbjct 92632 AGTGTTCTACCGTCCTCGAGCTGTTTACCCGCAAAGATCAATCGCTGCTGGTCAGGCGGG 92691 Query 151998 ATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACT 152057 || |||||||| || |||||||| || || |||| | | | ||||| || || Sbjct 92692 ATACCTTCCTTGTCCTGAATTTTCGCCTTCACGTTCTCGATGGTATCTGAGGGTTCGACC 92751 Query 152058 TCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || | ||||| || || ||||| | |||||| ||||||| ||||| Sbjct 92752 TCCAAGGTAATGGTCTTCCCCGTCAAAGTCTTTACGAAGATTTGCAT 92798 Score = 91.5 bits (100), Expect = 3e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || ||||| | || || || ||||||||||| || | || || | Sbjct 92808 GAGACGGAGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGATAGCGTGCG 92867 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || ||| || || ||||| || | ||| ||||| | || || || || Sbjct 92868 ACCGTCCTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTC 92927 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || ||||||||||| ||| || |||| | | |||| ||| |||||||| || Sbjct 92928 TTTGTCTTGAATTTTCGCTTTTACGTTCTCAATGGTGTCGCTTGGCTCAACTTCAAGTGT 92987 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| ||||| || || ||||| || | ||||||| Sbjct 92988 TATTGTTTTTCCCGTAAGGGTTTTCACAAAAATCTGCATT 93027 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || |||||||||||||| || ||||| || || | || |||| || ||| Sbjct 100223 AGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGATAGCGTTCGGCCGTCT 100282 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| | ||| ||||| || | || || |||||||| ||| Sbjct 100283 TCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGCGGAATACCTTCCTTGTCT 100342 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||| || || | || | | || | || || || ||||| || || Sbjct 100343 TGAATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCAACCTCTAGAGTGATCGTC 100402 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || ||||||| |||||| Sbjct 100403 TTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| ||||| || || || ||||| |||||| | || | ||||| Sbjct 93231 AGCACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGGGTGCGGCCATCC 93290 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || || || || | | |||||||| | | || || || || || Sbjct 93291 TCCAACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCTTTGTCC 93350 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||| ||||||| | || | |||| || ||| |||||||| || || || Sbjct 93351 TGGATCTTTGCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTTCAAGCGTGATCGTC 93410 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| ||||||||||| || |||| ||||||| Sbjct 93411 TTGCCGGTGAGAGTCTTGACAAAGATCTGCATT 93443 >seq19980 Length=299602 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| || |||||||||||||| ||||| |||||||| ||||| || | | ||| | Sbjct 144725 AGTCGAAGTACAAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCTGAAAGAGTACGT 144666 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||||||||| ||| ||||| ||||| ||||||||||| || | | ||| || || Sbjct 144665 CCATCTTCTAGTTGTTTACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGGATACCCTCT 144606 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| ||||| || ||| |||| | |||| ||| || || || || || Sbjct 144605 TTGTCTTGGATTTTCGCCTTAACATTCTCAATTGTGTCAGAAGGTTCAACCTCCAGGGTG 144546 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || ||||||||||| || |||| |||||| Sbjct 144545 ATGGTTTTCCCGGTGAGAGTCTTTACAAAGATCTGCAT 144508 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||| || || |||||||| |||||||||||||| |||||||| |||| | || | Sbjct 145182 GAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAGTCGGAGAGCGTGCG 145123 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || ||| || ||||| || | ||| || || || | | |||||||| Sbjct 145122 ACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCGGGGGGAATTCCTTC 145063 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||||||||| ||| || |||| | | || ||| ||||||||||| Sbjct 145062 CTTGTCTTGAATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGGCTCGACTTCAAGAGT 145003 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || || || || || | |||||| Sbjct 145002 GATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 |||||||||||| || || ||||| |||||||||||||| | | ||| | || ||||| Sbjct 144489 GACAAGATGAAGGGTCGATTCTTTCTGGATGTTGTAATCAGAAAGAGTACGTCCGTCTTC 144430 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||| || || ||||| | |||||||||||| | | || || ||||| ||||| Sbjct 144429 CAACTGTTTACCAGCAAAGATTAACCTCTGCTGGTCTGGGGGAATCCCCTCCTTATCTTG 144370 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||| || |||||| | || | | || ||| ||| || ||||| || ||||| || Sbjct 144369 AATCTTCGCCTTGACATTTTCGATTGTATCAGAAGACTCCACCTCAAGGGTGATAGTCTT 144310 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCATTT 152106 || || | ||| ||||| || | ||||||| Sbjct 144309 TCCGGTTAAAGTTTTCACAAAAATTTGCATTT 144278 Score = 89.7 bits (98), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| |||||||| || || || ||||| ||||| || ||||| || | | || | Sbjct 144953 AGTCGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATATTGTAGTCCGAAAGGGTGCGT 144894 Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 |||||||| || ||||| ||||| ||||| | ||||| || || | | ||||||| Sbjct 144893 CCATCTTCAAGCTGCTTT--CCGGCAAAGATCAATCTCTGTTGATCGGGGGGAATTCCTT 144836 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| |||||||| || || || |||| | | || ||| ||| ||||| | | Sbjct 144835 CCTTGTCTTGAATCTTGGCCTTTACGTTCTCAATTGTATCAGAAGGCTCCACTTCCAAGG 144776 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || || || || || || ||||| | ||||| Sbjct 144775 TGATGGTCTTCCCAGTAAGGGTTTTGACGAAAATTTGCAT 144736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153518510488608