Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq7231 134 1e-26 seq19980 102 6e-17 >seq7231 Length=219762 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | || | | ||||| |||||||||||| |||||||| |||||||| || Sbjct 93440 CATTCCGCCACGGAGCCGAAGCACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTC 93499 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 |||| ||| | || || || || || ||||| || || | ||| ||||| || | Sbjct 93500 ACTGAGTGTGCGACCATCCTCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGG 93559 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | ||| ||||| ||| || || ||||| || | || || ||| || ||| Sbjct 93560 AGGAATACCCTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCAATTGTATCGCTGGGTTC 93619 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | || || ||||| |||||||||||||| |||||||| |||||| Sbjct 93620 AACCTCAAGTGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATG 93671 Score = 129 bits (142), Expect = 4e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| ||||| || || ||||||||||| || | ||| | |||| || Sbjct 92590 ACGAGGTGGAGCGTTGATTCTTTCTGGATGTTGTAGTCTGACAGTGTTCTACCGTCCTCG 92649 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || || ||||||||||| |||||||| || | || | ||||||||| ||| Sbjct 92650 AGCTGTTTACCCGCAAAGATCAATCGCTGCTGGTCAGGCGGGATACCTTCCTTGTCCTGA 92709 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || ||| |||| | |||| | ||||| || | || ||| ||||||| ||||| ||||| Sbjct 92710 ATTTTCGCCTTC-ACGTTCTCGATGGTATCTGAGGGTTCGACCTCCAAGGTAATGGTCTT 92768 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | ||||| |||||||||||||| Sbjct 92769 CCCCGTCAAAGTCTTTACGAAGATTTGCAT 92798 Score = 120 bits (132), Expect = 2e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| ||| |||||||| ||||| || | || || |||| || Sbjct 100454 ACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTGAAAGGGTACGACCGTCTTCA 100513 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || || || |||||||||||||| | ||| ||||||| ||| | |||||| || || Sbjct 100514 AGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCTTTGTCTTGG 100573 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || ||| |||| || ||| | || ||||| | || || || |||| ||||| ||||| Sbjct 100574 ATTTTC-GCTTTAACATTCTCAATTGTGTCAGAGGGCTCAACTTCCAGGGTAATAGTCTT 100632 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || ||||| ||||||||||| ||||| Sbjct 100633 TCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || ||||| || || |||||||||| |||| ||| |||| || Sbjct 93918 ACGAGGTGAAGAGTCGATTCCTTCTGTATATTGTAATCGGAGAGTGTGCGACCGTCCTCT 93977 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || || |||| |||||||||||||| || | |||||| || ||| Sbjct 93978 AGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTATCCTGG 94037 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || | | |||| | || ||||| | || || || | || || || || Sbjct 94038 ATCTT-TGTCTTGACGTTCTCGATCGTGTCCGATCCCTCTACGTCTAGAGTGATAGTTTT 94096 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | || ||||| ||||||||||| Sbjct 94097 CCCAGTTAATGTTTTCACAAAGATTTGCAT 94126 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||||| | || || || |||||| ||| |||||||| ||||| || Sbjct 100660 CATACCTCCGCGAAGTCTAAGTACAAGATGGAGCGTGGACTCTTTTTGGATATTGTAGTC 100719 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || |||| |||| ||| || || |||||||| || | ||| || |||| Sbjct 100720 CGAAAGAGTACGTCCGTCTTCCAACTGTTTTCCAGCAAAGATTAATCTCTGTTGGTCTGG 100779 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||| ||||| || ||||| ||| | || | || || || | ||||| Sbjct 100780 GGGAATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTTTCGATTGTATCTGAAGATTC 100839 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||| | || || ||||| || || ||||| |||||||| || ||||| Sbjct 100840 CACCTCAAGGGTGATAGTCTTACCGGTTAGGGTTTTCACGAAAATCTGCAT 100890 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| |||| || | | || ||||| || || ||| || || ||||| || || Sbjct 100204 CATTCCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTC 100263 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || |||| || |||||||| || |||||||| || | |||||||| | Sbjct 100264 TGATAGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGG 100323 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||||||||| || ||||| ||| | || ||| | || || ||| | || Sbjct 100324 CGGAATACCTTCCTTGTCTTGAATCTT-TGCCTTAACGTTTTCGATTGTATCGCTAGGTT 100382 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | || ||||||||||| || || || || |||||||| ||||| Sbjct 100383 CAACCTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| || || | ||||| ||||| ||||||||||| || | || ||| |||| || Sbjct 92817 CACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACCGTCCTC 92876 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || || || || |||||||| | |||||| || || | || | || || || || Sbjct 92877 GAGTTGTTTTCCAGCAAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTGTCTTG 92936 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || ||| |||| | |||| | ||||||||| | || || || | || || || | Sbjct 92937 AATTTTC-GCTTTTACGTTCTCAATGGTGTCGCTTGGCTCAACTTCAAGTGTTATTGTTT 92995 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| ||||| ||||| || || ||||| Sbjct 92996 TTCCCGTAAGGGTTTTCACAAAAATCTGCAT 93026 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/238 (68%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 44100 TTTATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGT 44159 ||||||| ||| || | ||||| | |||||| ||||| || ||| || || |||| Sbjct 99972 TTTATTT---TCCTCCGCGGAGTCTGAGCACCAGATGAAGAGTAGACTCTTTCTGAATGT 100028 Query 44160 TGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCT 44219 | || || | || || | || || ||||| || || ||||| || | | ||| | Sbjct 100029 TATAGTCAGATAGAGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTT 100088 Query 44220 GATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGG 44279 |||| | ||| | ||||| || ||| || || ||| | || | ||||| || Sbjct 100089 GATCAGGAGGGATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTTTCAATGGTATCAC 100148 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||| ||||| | || || || || || ||||| ||||||||||| || ||||| Sbjct 100149 TGGATTCTACCTCGAGTGTGATAGTTTTGCCTGTGAGCGTCTTCACGAAAATCTGCAT 100206 >seq19980 Length=299602 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| ||| | ||| || || ||||| || || || |||||||||||||| Sbjct 144510 CATACCACCTCGCAGACGCAAGACAAGATGAAGGGTCGATTCTTTCTGGATGTTGTAATC 144451 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || |||| |||| ||| || || |||||||| || | |||||| |||| Sbjct 144450 AGAAAGAGTACGTCCGTCTTCCAACTGTTTACCAGCAAAGATTAACCTCTGCTGGTCTGG 144391 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| || |||||| ||| | || | || || || | || || Sbjct 144390 GGGAATCCCCTCCTTATCTTGAATCTTCGCCTTGACATTTTCGATTGTATCAGAAGACTC 144331 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||| | || || |||||||| || | || ||||| || |||||||| Sbjct 144330 CACCTCAAGGGTGATAGTCTTTCCGGTTAAAGTTTTCACAAAAATTTGCAT 144280 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| ||||||||| || ||||| || | || ||| | || || Sbjct 144944 ACAAGGTGGAGGGTGGACTCCTTTTGAATATTGTAGTCCGAAAGGGTGCGTCCATCTTCA 144885 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| |||||||||||||| | ||| ||||| | || | |||||||| || Sbjct 144884 AGCTGCTTTCCGGCAAAGATCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTGTCTTGA 144825 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || | | |||| | || || || | | ||||| |||| || || ||||| Sbjct 144824 ATCTT-GGCCTTTACGTTCTCAATTGTATCAGAAGGCTCCACTTCCAAGGTGATGGTCTT 144766 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| || ||||| |||||||| Sbjct 144765 CCCAGTAAGGGTTTTGACGAAAATTTGCAT 144736 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| ||| |||||||||||| ||||| || | || || | || || Sbjct 144716 ACAAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCTGAAAGAGTACGTCCATCTTCT 144657 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || || || ||||||||||| | | ||||||||| | || | ||| || || || Sbjct 144656 AGTTGTTTACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGGATACCCTCTTTGTCTTGG 144597 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || ||| || | || ||| | || ||||| | | ||| ||||||| || || || || Sbjct 144596 ATTTTC-GCCTTAACATTCTCAATTGTGTCAGAAGGTTCAACCTCCAGGGTGATGGTTTT 144538 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| || ||||| ||||| Sbjct 144537 CCCGGTGAGAGTCTTTACAAAGATCTGCAT 144508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359900686792416