Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq7231 134 1e-26
seq19980 102 6e-17
>seq7231
Length=219762
Score = 134 bits (148), Expect = 1e-26
Identities = 169/232 (73%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
|||||| || | || | | ||||| |||||||||||| |||||||| |||||||| ||
Sbjct 93440 CATTCCGCCACGGAGCCGAAGCACCAAGTGAAGCGTGCTTTCCTTTTGAATGTTGTAGTC 93499
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
|||| ||| | || || || || || ||||| || || | ||| ||||| || |
Sbjct 93500 ACTGAGTGTGCGACCATCCTCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCAGG 93559
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286
||| | ||| ||||| ||| || || ||||| || | || || ||| || |||
Sbjct 93560 AGGAATACCCTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCAATTGTATCGCTGGGTTC 93619
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
||||| | || || ||||| |||||||||||||| |||||||| ||||||
Sbjct 93620 AACCTCAAGTGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATG 93671
Score = 129 bits (142), Expect = 4e-25
Identities = 156/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| ||||| || || ||||||||||| || | ||| | |||| ||
Sbjct 92590 ACGAGGTGGAGCGTTGATTCTTTCTGGATGTTGTAGTCTGACAGTGTTCTACCGTCCTCG 92649
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
||||| || || ||||||||||| |||||||| || | || | ||||||||| |||
Sbjct 92650 AGCTGTTTACCCGCAAAGATCAATCGCTGCTGGTCAGGCGGGATACCTTCCTTGTCCTGA 92709
Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|| ||| |||| | |||| | ||||| || | || ||| ||||||| ||||| |||||
Sbjct 92710 ATTTTCGCCTTC-ACGTTCTCGATGGTATCTGAGGGTTCGACCTCCAAGGTAATGGTCTT 92768
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| | ||||| ||||||||||||||
Sbjct 92769 CCCCGTCAAAGTCTTTACGAAGATTTGCAT 92798
Score = 120 bits (132), Expect = 2e-22
Identities = 154/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| || || || ||| ||| |||||||| ||||| || | || || |||| ||
Sbjct 100454 ACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTGAAAGGGTACGACCGTCTTCA 100513
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| || || |||||||||||||| | ||| ||||||| ||| | |||||| || ||
Sbjct 100514 AGTTGTTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCTTTGTCTTGG 100573
Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|| ||| |||| || ||| | || ||||| | || || || |||| ||||| |||||
Sbjct 100574 ATTTTC-GCTTTAACATTCTCAATTGTGTCAGAGGGCTCAACTTCCAGGGTAATAGTCTT 100632
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || ||||| ||||||||||| |||||
Sbjct 100633 TCCGGTAAGGGTTTTCACGAAGATCTGCAT 100662
Score = 102 bits (112), Expect = 6e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| |||||||| || ||||| || || |||||||||| |||| ||| |||| ||
Sbjct 93918 ACGAGGTGAAGAGTCGATTCCTTCTGTATATTGTAATCGGAGAGTGTGCGACCGTCCTCT 93977
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || || || |||| |||||||||||||| || | |||||| || |||
Sbjct 93978 AGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGTGGAATACCTTCTTTATCCTGG 94037
Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| || | | |||| | || ||||| | || || || | || || || ||
Sbjct 94038 ATCTT-TGTCTTGACGTTCTCGATCGTGTCCGATCCCTCTACGTCTAGAGTGATAGTTTT 94096
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || | || ||||| |||||||||||
Sbjct 94097 CCCAGTTAATGTTTTCACAAAGATTTGCAT 94126
Score = 102 bits (112), Expect = 6e-17
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | ||||| | || || || |||||| ||| |||||||| ||||| ||
Sbjct 100660 CATACCTCCGCGAAGTCTAAGTACAAGATGGAGCGTGGACTCTTTTTGGATATTGTAGTC 100719
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || || |||| |||| ||| || || |||||||| || | ||| || ||||
Sbjct 100720 CGAAAGAGTACGTCCGTCTTCCAACTGTTTTCCAGCAAAGATTAATCTCTGTTGGTCTGG 100779
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286
|| | ||| ||||| || ||||| ||| | || | || || || | |||||
Sbjct 100780 GGGAATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTTTCGATTGTATCTGAAGATTC 100839
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||| | || || ||||| || || ||||| |||||||| || |||||
Sbjct 100840 CACCTCAAGGGTGATAGTCTTACCGGTTAGGGTTTTCACGAAAATCTGCAT 100890
Score = 96.9 bits (106), Expect = 2e-15
Identities = 162/232 (70%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
|||||| |||| || | | || ||||| || || ||| || || ||||| || ||
Sbjct 100204 CATTCCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTC 100263
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || || |||| || |||||||| || |||||||| || | |||||||| |
Sbjct 100264 TGATAGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGG 100323
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285
|| | ||||||||| || ||||| ||| | || ||| | || || ||| | ||
Sbjct 100324 CGGAATACCTTCCTTGTCTTGAATCTT-TGCCTTAACGTTTTCGATTGTATCGCTAGGTT 100382
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| ||||| | || ||||||||||| || || || || |||||||| |||||
Sbjct 100383 CAACCTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434
Score = 86.0 bits (94), Expect = 5e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||| || || | ||||| ||||| ||||||||||| || | || ||| |||| ||
Sbjct 92817 CACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGATAGCGTGCGACCGTCCTC 92876
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| || || || |||||||| | |||||| || || | || | || || || ||
Sbjct 92877 GAGTTGTTTTCCAGCAAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCTTTGTCTTG 92936
Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|| ||| |||| | |||| | ||||||||| | || || || | || || || |
Sbjct 92937 AATTTTC-GCTTTTACGTTCTCAATGGTGTCGCTTGGCTCAACTTCAAGTGTTATTGTTT 92995
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||| ||||| ||||| || || |||||
Sbjct 92996 TTCCCGTAAGGGTTTTCACAAAAATCTGCAT 93026
Score = 86.0 bits (94), Expect = 5e-12
Identities = 162/238 (68%), Gaps = 3/238 (1%)
Strand=Plus/Plus
Query 44100 TTTATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGT 44159
||||||| ||| || | ||||| | |||||| ||||| || ||| || || ||||
Sbjct 99972 TTTATTT---TCCTCCGCGGAGTCTGAGCACCAGATGAAGAGTAGACTCTTTCTGAATGT 100028
Query 44160 TGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCT 44219
| || || | || || | || || ||||| || || ||||| || | | ||| |
Sbjct 100029 TATAGTCAGATAGAGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTT 100088
Query 44220 GATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGG 44279
|||| | ||| | ||||| || ||| || || ||| | || | ||||| ||
Sbjct 100089 GATCAGGAGGGATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTTTCAATGGTATCAC 100148
Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||| ||||| | || || || || || ||||| ||||||||||| || |||||
Sbjct 100149 TGGATTCTACCTCGAGTGTGATAGTTTTGCCTGTGAGCGTCTTCACGAAAATCTGCAT 100206
>seq19980
Length=299602
Score = 102 bits (112), Expect = 6e-17
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || |||| ||| | ||| || || ||||| || || || ||||||||||||||
Sbjct 144510 CATACCACCTCGCAGACGCAAGACAAGATGAAGGGTCGATTCTTTCTGGATGTTGTAATC 144451
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || || |||| |||| ||| || || |||||||| || | |||||| ||||
Sbjct 144450 AGAAAGAGTACGTCCGTCTTCCAACTGTTTACCAGCAAAGATTAACCTCTGCTGGTCTGG 144391
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286
|| | || ||||| || |||||| ||| | || | || || || | || ||
Sbjct 144390 GGGAATCCCCTCCTTATCTTGAATCTTCGCCTTGACATTTTCGATTGTATCAGAAGACTC 144331
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||| | || || |||||||| || | || ||||| || ||||||||
Sbjct 144330 CACCTCAAGGGTGATAGTCTTTCCGGTTAAAGTTTTCACAAAAATTTGCAT 144280
Score = 102 bits (112), Expect = 6e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| || ||| ||||||||| || ||||| || | || ||| | || ||
Sbjct 144944 ACAAGGTGGAGGGTGGACTCCTTTTGAATATTGTAGTCCGAAAGGGTGCGTCCATCTTCA 144885
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| |||||||||||||| | ||| ||||| | || | |||||||| ||
Sbjct 144884 AGCTGCTTTCCGGCAAAGATCAATCTCTGTTGATCGGGGGGAATTCCTTCCTTGTCTTGA 144825
Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| || | | |||| | || || || | | ||||| |||| || || |||||
Sbjct 144824 ATCTT-GGCCTTTACGTTCTCAATTGTATCAGAAGGCTCCACTTCCAAGGTGATGGTCTT 144766
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || ||||| || ||||| ||||||||
Sbjct 144765 CCCAGTAAGGGTTTTGACGAAAATTTGCAT 144736
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| || ||||| ||| |||||||||||| ||||| || | || || | || ||
Sbjct 144716 ACAAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCTGAAAGAGTACGTCCATCTTCT 144657
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| || || ||||||||||| | | ||||||||| | || | ||| || || ||
Sbjct 144656 AGTTGTTTACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGGATACCCTCTTTGTCTTGG 144597
Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|| ||| || | || ||| | || ||||| | | ||| ||||||| || || || ||
Sbjct 144596 ATTTTC-GCCTTAACATTCTCAATTGTGTCAGAAGGTTCAACCTCCAGGGTGATGGTTTT 144538
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| ||||| || ||||| |||||
Sbjct 144537 CCCGGTGAGAGTCTTTACAAAGATCTGCAT 144508
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359900686792416
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