Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq7231 168 2e-36 seq19980 140 8e-28 >seq7231 Length=219762 Score = 168 bits (186), Expect = 2e-36 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || |||||||| ||||| ||||| |||||||| ||| | || Sbjct 100203 CAGATTTTCGTGAAGACGCTCACAGGCAAAACTATCACACTCGAGGTAGAATCCAGTGAT 100144 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| || |||||||||||||||||||||||||| || || || Sbjct 100143 ACCATTGAAAACGTCAAGGCCAAAATTCAGGACAAAGAAGGAATCCCTCCTGATCAACAG 100084 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || || || || || ||||||||||||||||| | ||||| | || |||||| | Sbjct 100083 AGGCTAATTTTTGCTGGTAAACAGCTCGAAGATGGTCGTACTCTATCTGACTATAACATT 100024 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || ||||| || || || ||||| || | |||||| Sbjct 100023 CAGAAAGAGTCTACTCTTCATCTGGTGCTCAGACTC 99988 Score = 163 bits (180), Expect = 7e-35 Identities = 160/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || |||||||| || ||||| ||||| || ||| || Sbjct 92380 CAAATTTTCGTTAAGACGTTGACCGGAAAAACCATAACCCTTGAGGTTGAGCCCTCGGAT 92321 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||| |||||||| || ||||| ||||| || || ||||| Sbjct 92320 ACCATCGAAAACGTAAAGGCAAAAATTCAGGATAAGGAAGGCATCCCCCCTGATCAGCAG 92261 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||| |||||||| ||||| |||||| | || || ||||||| || | Sbjct 92260 CGTCTTATATTCGCTGGAAAACAACTCGAGGATGGACGTACCCTGTCCGATTACAATATT 92201 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||||||||| ||||| |||| Sbjct 92200 CAGAAAGAATCAACTCTGCA-CTTG 92177 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || |||||||| ||||||||| ||||| Sbjct 100887 CAGATTTTCGTGAAAACCCTAACCGGTAAGACTATCACCCTTGAGGTGGAATCTTCAGAT 100828 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||||||||| ||||| || || || || || ||||| || Sbjct 100827 ACAATCGAAAATGTCAAGGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAACAG 100768 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||||||| | ||||| ||| | |||||| | || || || || Sbjct 100767 AGATTAATCTTTGCTGGAAAACAGTTGGAAGACGGACGTACTCTTTCGGACTACAATATC 100708 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||||||| || || || |||||||| | ||||| Sbjct 100707 CAAAAAGAGTCCACGCTCCATCTTGTACTTAGACT 100673 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | || || || || || ||| | ||||| ||| |||||| Sbjct 92795 CAAATCTTCGTAAAGACTTTGACGGGGAAGACCATTACCTTGGAGGTCGAACCCTCAGAT 92736 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || || ||||||||||| ||||| ||||| || |||||||| Sbjct 92735 ACCATCGAGAACGTGAAGGCGAAAATTCAGGACAAGGAAGGTATCCCGCCTGACCAGCAG 92676 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| || || ||||||||||| || || || || || | || || ||| || Sbjct 92675 CGATTGATCTTTGCGGGTAAACAGCTCGAGGACGGTAGAACACTGTCAGACTACAACATC 92616 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || ||||||||||| || || || ||| Sbjct 92615 CAGAAAGAATCAACGCTCCACCTCGTT 92589 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || |||||||| || || |||||||| || || || || || ||| Sbjct 93439 CAGATCTTTGTCAAGACTCTCACCGGCAAGACGATCACGCTTGAAGTCGAGCCATCCGAC 93380 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| |||||| ||||||||||| || || ||||| ||||||||| Sbjct 93379 ACAATTGAAAATGTCAAAGCAAAGATCCAGGACAAAGAGGGCATTCCTCCTGACCAGCAA 93320 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||||||| | || ||||| | || ||| |||||||||| | Sbjct 93319 CGTTTGATTTTTGCTGGAAAACAGTTGGAGGATGGCCGCACCCTTAACGATTATAACATT 93260 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||| || || |||||||| Sbjct 93259 CAGAAGGAAAGCACTCTCCATCTTGT 93234 Score = 136 bits (150), Expect = 1e-26 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || ||||| |||||||| |||||||| || || ||| | || Sbjct 93895 CAGATCTTTGTGAAGACGCTCACTGGAAAAACCATCACCCTTGAAGTTGAACCCAGCGAT 93836 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||| || ||||| ||||| || ||||||||||| |||||| Sbjct 93835 ACAATTGAAAATGTGAAGGCAAAAATCCAGGATAAAGAGGGCATCCCTCCGGATCAGCAA 93776 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || || || ||||| || | || || | |||||||| | Sbjct 93775 CGTCTGATCTTTGCTGGCAAGCAACTGGAAGACGGCCGTACCCTCTCAGATTATAATATT 93716 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| || || ||||||||||| || ||| Sbjct 93715 CAAAAGGAGTCGACACTGCATCTCGTCTTG 93686 Score = 136 bits (150), Expect = 1e-26 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| || || ||||| || || ||||| || || || ||| ||| Sbjct 100659 CAGATCTTCGTGAAAACCCTTACCGGAAAGACTATTACCCTGGAAGTTGAGCCCTCTGAC 100600 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || || || ||||||||||| |||||||| || || || Sbjct 100599 ACAATTGAGAATGTTAAAGCGAAAATCCAAGACAAAGAAGGTATCCCTCCAGATCAACAG 100540 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| ||||| ||||| || ||||| || | || ||| | || || || || Sbjct 100539 AGGTTGATCTTTGCCGGTAAACAACTTGAAGACGGTCGTACCCTTTCAGACTACAATATC 100480 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||||||| || || || ||||||||| | |||| Sbjct 100479 CAAAAAGAGTCCACCCTCCATCTTGTTCTTCGACT 100445 Score = 129 bits (142), Expect = 1e-24 Identities = 158/215 (73%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| || |||||||| | || || ||||| ||||| || || || || Sbjct 94129 AAAATGC---AAATCTTTGTGAAAACATTAACTGGGAAAACTATCACTCTAGACGTAGAG 94073 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 | || ||||| |||||||||||||| |||||| ||||| |||||||| || || || Sbjct 94072 GGATCGGACACGATCGAGAACGTCAAGACAAAGATCCAGGATAAAGAAGGTATTCCACCA 94013 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || || || ||||| || || ||||| || || || | || || ||||| Sbjct 94012 GATCAGCAGCGTCTGATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACACTCTCCGAT 93953 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || || | || || ||||| || || || || || Sbjct 93952 TACAATATACAGAAGGAATCGACTCTTCACCTCGT 93918 Score = 111 bits (122), Expect = 4e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||| || ||||| ||| | || Sbjct 93667 CAGATCTTCGTCAAGACCCTCACGGGGAAGACTATCACACTTGAGGTTGAACCCAGCGAT 93608 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || || || |||||||| || || || ||||| ||||||||| Sbjct 93607 ACAATTGAAAACGTGAAGGCCAAAATCCAGGACAAGGAGGGTATTCCTCCTGACCAGCAA 93548 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||||||||| ||||| ||||| | || || || || ||| | Sbjct 93547 CGTCTCATTTTCGCCGGAAAACAACTCGAGGATGGTCGCACACTCAGTGACTACAACATT 93488 Query 178104 CAAAAAGAA 178112 ||||| ||| Sbjct 93487 CAAAAGGAA 93479 >seq19980 Length=299602 Score = 140 bits (154), Expect = 8e-28 Identities = 165/222 (74%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || ||||| || ||||| || || |||||||||||||| || || || || |||| Sbjct 144967 CAGATTTTTGTTAAAACGCTTACCGGAAAAACGATCACTCTTGAAGTCGAGCCAAGC--- 145023 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || || || |||||||| ||| || ||||| ||||| |||||||| || || || || Sbjct 145024 GATACGATTGAGAACGTTAAAGCCAAAATTCAAGACAAGGAAGGAATTCCCCCCGATCAA 145083 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 ||| | | || ||||| || ||||||||||| ||||| | || || |||| || ||| Sbjct 145084 CAAAGGTTGATTTTCGCAGGCAAACAGCTCGAGGATGGTCGCACGCTCTCCGACTACAAC 145143 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | |||||||| || || || ||||| || |||||||| || Sbjct 145144 ATTCAAAAAGAGTCTACCCTTCATCTGGTGCTGAGACTCCGA 145185 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || || || || || |||||| | || ||||| || || Sbjct 144739 CAAATTTTCGTCAAAACCCTTACTGGGAAGACCATCACCTTGGAAGTGGAGCCTTCTGAT 144798 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || |||||||| ||||| |||||||| || || || || || Sbjct 144799 ACAATTGAGAACGTAAAGGCCAAGATTCAAGACAAGGAAGGAATTCCCCCCGATCAACAG 144858 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| |||||||| ||||| ||||||||| | || ||| | || || || | Sbjct 144859 AGATTGATCTTTGCCGGAAAGCAGCTTGAAGATGGACGCACCCTTTCGGACTACAATATT 144918 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || || || ||||| Sbjct 144919 CAAAAGGAGTCCACCCTCCACCTTGT 144944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203415834462912