Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq7231 168 2e-36
seq19980 140 8e-28
>seq7231
Length=219762
Score = 168 bits (186), Expect = 2e-36
Identities = 167/216 (77%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || |||||||| ||||| ||||| |||||||| ||| | ||
Sbjct 100203 CAGATTTTCGTGAAGACGCTCACAGGCAAAACTATCACACTCGAGGTAGAATCCAGTGAT 100144
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || |||||||| || |||||||||||||||||||||||||| || || ||
Sbjct 100143 ACCATTGAAAACGTCAAGGCCAAAATTCAGGACAAAGAAGGAATCCCTCCTGATCAACAG 100084
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| || || || || || ||||||||||||||||| | ||||| | || |||||| |
Sbjct 100083 AGGCTAATTTTTGCTGGTAAACAGCTCGAAGATGGTCGTACTCTATCTGACTATAACATT 100024
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139
|| ||||| || || || ||||| || | ||||||
Sbjct 100023 CAGAAAGAGTCTACTCTTCATCTGGTGCTCAGACTC 99988
Score = 163 bits (180), Expect = 7e-35
Identities = 160/205 (78%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || || | || |||||||| || ||||| ||||| || ||| ||
Sbjct 92380 CAAATTTTCGTTAAGACGTTGACCGGAAAAACCATAACCCTTGAGGTTGAGCCCTCGGAT 92321
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| ||||| || ||| |||||||| || ||||| ||||| || || |||||
Sbjct 92320 ACCATCGAAAACGTAAAGGCAAAAATTCAGGATAAGGAAGGCATCCCCCCTGATCAGCAG 92261
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||| ||||| |||||||| ||||| |||||| | || || ||||||| || |
Sbjct 92260 CGTCTTATATTCGCTGGAAAACAACTCGAGGATGGACGTACCCTGTCCGATTACAATATT 92201
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| ||||||||||| ||||| ||||
Sbjct 92200 CAGAAAGAATCAACTCTGCA-CTTG 92177
Score = 163 bits (180), Expect = 7e-35
Identities = 165/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||||||||| || || || || || |||||||| ||||||||| |||||
Sbjct 100887 CAGATTTTCGTGAAAACCCTAACCGGTAAGACTATCACCCTTGAGGTGGAATCTTCAGAT 100828
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || ||||| ||||||||| ||||| || || || || || ||||| ||
Sbjct 100827 ACAATCGAAAATGTCAAGGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAACAG 100768
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| || ||||||||| | ||||| ||| | |||||| | || || || ||
Sbjct 100767 AGATTAATCTTTGCTGGAAAACAGTTGGAAGACGGACGTACTCTTTCGGACTACAATATC 100708
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
|||||||| || || || |||||||| | |||||
Sbjct 100707 CAAAAAGAGTCCACGCTCCATCTTGTACTTAGACT 100673
Score = 158 bits (174), Expect = 3e-33
Identities = 159/207 (77%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || ||| | || || || || || ||| | ||||| ||| ||||||
Sbjct 92795 CAAATCTTCGTAAAGACTTTGACGGGGAAGACCATTACCTTGGAGGTCGAACCCTCAGAT 92736
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||||||||| || || ||||||||||| ||||| ||||| || ||||||||
Sbjct 92735 ACCATCGAGAACGTGAAGGCGAAAATTCAGGACAAGGAAGGTATCCCGCCTGACCAGCAG 92676
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | ||||| || || ||||||||||| || || || || || | || || ||| ||
Sbjct 92675 CGATTGATCTTTGCGGGTAAACAGCTCGAGGACGGTAGAACACTGTCAGACTACAACATC 92616
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|| ||||||||||| || || || |||
Sbjct 92615 CAGAAAGAATCAACGCTCCACCTCGTT 92589
Score = 138 bits (152), Expect = 3e-27
Identities = 154/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || |||||||| || || |||||||| || || || || || |||
Sbjct 93439 CAGATCTTTGTCAAGACTCTCACCGGCAAGACGATCACGCTTGAAGTCGAGCCATCCGAC 93380
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || |||||| |||||| ||||||||||| || || ||||| |||||||||
Sbjct 93379 ACAATTGAAAATGTCAAAGCAAAGATCCAGGACAAAGAGGGCATTCCTCCTGACCAGCAA 93320
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || || || ||||||||| | || ||||| | || ||| |||||||||| |
Sbjct 93319 CGTTTGATTTTTGCTGGAAAACAGTTGGAGGATGGCCGCACCCTTAACGATTATAACATT 93260
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || ||| || || ||||||||
Sbjct 93259 CAGAAGGAAAGCACTCTCCATCTTGT 93234
Score = 136 bits (150), Expect = 1e-26
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || ||||| || ||||| |||||||| |||||||| || || ||| | ||
Sbjct 93895 CAGATCTTTGTGAAGACGCTCACTGGAAAAACCATCACCCTTGAAGTTGAACCCAGCGAT 93836
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||| || ||||| ||||| || ||||||||||| ||||||
Sbjct 93835 ACAATTGAAAATGTGAAGGCAAAAATCCAGGATAAAGAGGGCATCCCTCCGGATCAGCAA 93776
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| || || || || || ||||| || | || || | |||||||| |
Sbjct 93775 CGTCTGATCTTTGCTGGCAAGCAACTGGAAGACGGCCGTACCCTCTCAGATTATAATATT 93716
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133
||||| || || ||||||||||| || |||
Sbjct 93715 CAAAAGGAGTCGACACTGCATCTCGTCTTG 93686
Score = 136 bits (150), Expect = 1e-26
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||||||||| || || ||||| || || ||||| || || || ||| |||
Sbjct 100659 CAGATCTTCGTGAAAACCCTTACCGGAAAGACTATTACCCTGGAAGTTGAGCCCTCTGAC 100600
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || || || ||||||||||| |||||||| || || ||
Sbjct 100599 ACAATTGAGAATGTTAAAGCGAAAATCCAAGACAAAGAAGGTATCCCTCCAGATCAACAG 100540
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | ||||| ||||| ||||| || ||||| || | || ||| | || || || ||
Sbjct 100539 AGGTTGATCTTTGCCGGTAAACAACTTGAAGACGGTCGTACCCTTTCAGACTACAATATC 100480
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
|||||||| || || || ||||||||| | ||||
Sbjct 100479 CAAAAAGAGTCCACCCTCCATCTTGTTCTTCGACT 100445
Score = 129 bits (142), Expect = 1e-24
Identities = 158/215 (73%), Gaps = 3/215 (1%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| |||| || |||||||| | || || ||||| ||||| || || || ||
Sbjct 94129 AAAATGC---AAATCTTTGTGAAAACATTAACTGGGAAAACTATCACTCTAGACGTAGAG 94073
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
| || ||||| |||||||||||||| |||||| ||||| |||||||| || || ||
Sbjct 94072 GGATCGGACACGATCGAGAACGTCAAGACAAAGATCCAGGATAAAGAAGGTATTCCACCA 94013
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094
|| ||||| || || || ||||| || || ||||| || || || | || || |||||
Sbjct 94012 GATCAGCAGCGTCTGATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACACTCTCCGAT 93953
Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
|| || | || || ||||| || || || || ||
Sbjct 93952 TACAATATACAGAAGGAATCGACTCTTCACCTCGT 93918
Score = 111 bits (122), Expect = 4e-19
Identities = 138/189 (73%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || ||||| || ||||| ||| | ||
Sbjct 93667 CAGATCTTCGTCAAGACCCTCACGGGGAAGACTATCACACTTGAGGTTGAACCCAGCGAT 93608
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || ||||| || || || |||||||| || || || ||||| |||||||||
Sbjct 93607 ACAATTGAAAACGTGAAGGCCAAAATCCAGGACAAGGAGGGTATTCCTCCTGACCAGCAA 93548
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || |||||||||||||| ||||| ||||| | || || || || ||| |
Sbjct 93547 CGTCTCATTTTCGCCGGAAAACAACTCGAGGATGGTCGCACACTCAGTGACTACAACATT 93488
Query 178104 CAAAAAGAA 178112
||||| |||
Sbjct 93487 CAAAAGGAA 93479
>seq19980
Length=299602
Score = 140 bits (154), Expect = 8e-28
Identities = 165/222 (74%), Gaps = 6/222 (3%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980
|| ||||| || ||||| || || |||||||||||||| || || || || ||||
Sbjct 144967 CAGATTTTTGTTAAAACGCTTACCGGAAAAACGATCACTCTTGAAGTCGAGCCAAGC--- 145023
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
|| || || |||||||| ||| || ||||| ||||| |||||||| || || || ||
Sbjct 145024 GATACGATTGAGAACGTTAAAGCCAAAATTCAAGACAAGGAAGGAATTCCCCCCGATCAA 145083
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
||| | | || ||||| || ||||||||||| ||||| | || || |||| || |||
Sbjct 145084 CAAAGGTTGATTTTCGCAGGCAAACAGCTCGAGGATGGTCGCACGCTCTCCGACTACAAC 145143
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
| |||||||| || || || ||||| || |||||||| ||
Sbjct 145144 ATTCAAAAAGAGTCTACCCTTCATCTGGTGCTGAGACTCCGA 145185
Score = 132 bits (146), Expect = 1e-25
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| ||||| || || || || || |||||| | || ||||| || ||
Sbjct 144739 CAAATTTTCGTCAAAACCCTTACTGGGAAGACCATCACCTTGGAAGTGGAGCCTTCTGAT 144798
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || |||||||| || |||||||| ||||| |||||||| || || || || ||
Sbjct 144799 ACAATTGAGAACGTAAAGGCCAAGATTCAAGACAAGGAAGGAATTCCCCCCGATCAACAG 144858
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| |||||||| ||||| ||||||||| | || ||| | || || || |
Sbjct 144859 AGATTGATCTTTGCCGGAAAGCAGCTTGAAGATGGACGCACCCTTTCGGACTACAATATT 144918
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
||||| || || || || || |||||
Sbjct 144919 CAAAAGGAGTCCACCCTCCACCTTGT 144944
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203415834462912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |