Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09]
20,448 sequences; 331,927,360 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq7231 147 2e-30
seq19980 131 2e-25
>seq7231
Length=219762
Score = 147 bits (162), Expect = 2e-30
Identities = 171/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | ||| ||||||| ||||| |||||||| ||||| ||||| ||
Sbjct 92800 CCGCCACGGAGACGGAGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGAT 92859
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| ||||| || || || || || || || ||||||||||| | |||
Sbjct 92860 AGCGTGCGACCGTCCTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGTTGGTCAGGCGGA 92919
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814
| || ||| |||| | ||| |||| |||| ||| | | |||||||| | ||| ||
Sbjct 92920 ATGCCCTCTTTGT-CTTGAATTTTCGCTTTTACGTTCTCAATGGTGTCGCTTGGCTCAAC 92978
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| | ||||| ||||| ||||| || || || || |||||||||||
Sbjct 92979 TTCAAGTGTTATTGTTTTTCCCGTAAGGGTTTTCACAAAAATCTGCAT 93026
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || | | ||||||||| || || ||| ||||||||||||||||| ||
Sbjct 99980 CCTCCGCGGAGTCTGAGCACCAGATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGAT 100039
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || |||||||| || || || || || || | |||||| || | ||
Sbjct 100040 AGAGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGAGGG 100099
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | || |||||| ||| |||| || | ||| | | || || || || || ||
Sbjct 100100 ATTCCTTCTTTGTCC-TGAATTTTGGCCTTGACGTTTTCAATGGTATCACTGGATTCTAC 100158
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || ||||| || || |||||||| ||||||||||||||
Sbjct 100159 CTCGAGTGTGATAGTTTTGCCTGTGAGCGTCTTCACGAAAATCTGCAT 100206
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||||| || || || || || ||| ||||||||||||||||| ||
Sbjct 100208 CCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGAT 100267
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| || ||||||||||| || || || | | || || || | |||
Sbjct 100268 AGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGCGGA 100327
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||||||| | ||| | ||||| | |||| | | || ||||| | || ||
Sbjct 100328 ATACCTTCCTTGT-CTTGAATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCAAC 100386
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || ||||| || || |||||||| |||||||| ||||||||
Sbjct 100387 CTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434
Score = 105 bits (116), Expect = 6e-18
Identities = 160/225 (71%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 41639 CCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGG 41698
|| || || || | ||| ||||| || ||||| ||||||||||||||||| ||| |||
Sbjct 93219 CCTCGCAGGCGAAGCACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGG 93278
Query 41699 GTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACG 41758
||||| | || || | ||| || || || || |||| || || ||||| | |||| |
Sbjct 93279 GTGCGGCCATCCTCCAACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATG 93338
Query 41759 CTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTC 41817
| ||| |||||| || | ||||||| || | | |||||| | ||| || ||
Sbjct 93339 CCCTCTTTGTCC-TGGATCTTTGCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTTC 93397
Query 41818 CACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| ||| ||||| || || || || ||||| || || ||||||||
Sbjct 93398 AAGCGTGATCGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 93442
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/226 (70%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 41639 CCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGG 41698
|| || ||||| | || || || ||||| || ||||| ||||| ||||| || ||
Sbjct 92575 CCTCGGAGACGAAGAACGAGGTGGAGCGTTGATTCTTTCTGGATGTTGTAGTCTGACAGT 92634
Query 41699 GTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG-CGGGAAC 41757
|| | |||| |||||||| || || || || |||| ||||| ||||| | |||||
Sbjct 92635 GTTCTACCGTCCTCGAGCTGTTTACCCGCAAAGATCAATCGCTGCTGGTCAGGCGGGATA 92694
Query 41758 GCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCT 41816
|| ||||||||| ||| |||| || | ||| | | || || | || ||||
Sbjct 92695 CCT-TCCTTGTCC-TGAATTTTCGCCTTCACGTTCTCGATGGTATCTGAGGGTTCGACCT 92752
Query 41817 CCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| || || || || ||||||| ||||||||||| || |||||
Sbjct 92753 CCAAGGTAATGGTCTTCCCCGTCAAAGTCTTTACGAAGATTTGCAT 92798
>seq19980
Length=299602
Score = 131 bits (144), Expect = 2e-25
Identities = 171/234 (73%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 41630 TCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAG 41689
||| | || || || || | | ||||||||| || || ||| || |||||||| |||
Sbjct 145196 TCATCACCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAG 145137
Query 41690 TCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC 41749
|||||||| ||||| | || |||||||| ||||| ||||| |||| | ||||| ||
Sbjct 145136 TCGGAGAGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCG 145077
Query 41750 GCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGA 41808
| ||||| | ||||||| | ||| |||| |||| |||| | | || ||||| |
Sbjct 145076 GGGGGAATTCCTTCCTTGT-CTTGAATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGG 145018
Query 41809 CTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| || || | || |||||||| || || ||||| || || |||||||||||
Sbjct 145017 CTCGACTTCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462185835097600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |