Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Varroa_20destructor_20[genbank_20GCA_5F000181155.2_202017-05-09] 20,448 sequences; 331,927,360 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq7231 147 2e-30 seq19980 131 2e-25 >seq7231 Length=219762 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | ||| ||||||| ||||| |||||||| ||||| ||||| || Sbjct 92800 CCGCCACGGAGACGGAGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGAT 92859 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||| || || || || || || || ||||||||||| | ||| Sbjct 92860 AGCGTGCGACCGTCCTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGTTGGTCAGGCGGA 92919 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | || ||| |||| | ||| |||| |||| ||| | | |||||||| | ||| || Sbjct 92920 ATGCCCTCTTTGT-CTTGAATTTTCGCTTTTACGTTCTCAATGGTGTCGCTTGGCTCAAC 92978 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||||| ||||| ||||| || || || || ||||||||||| Sbjct 92979 TTCAAGTGTTATTGTTTTTCCCGTAAGGGTTTTCACAAAAATCTGCAT 93026 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || | | ||||||||| || || ||| ||||||||||||||||| || Sbjct 99980 CCTCCGCGGAGTCTGAGCACCAGATGAAGAGTAGACTCTTTCTGAATGTTATAGTCAGAT 100039 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || |||||||| || || || || || || | |||||| || | || Sbjct 100040 AGAGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATTAGCCTCTGTTGATCAGGAGGG 100099 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || |||||| ||| |||| || | ||| | | || || || || || || Sbjct 100100 ATTCCTTCTTTGTCC-TGAATTTTGGCCTTGACGTTTTCAATGGTATCACTGGATTCTAC 100158 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || ||||| || || |||||||| |||||||||||||| Sbjct 100159 CTCGAGTGTGATAGTTTTGCCTGTGAGCGTCTTCACGAAAATCTGCAT 100206 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||||| || || || || || ||| ||||||||||||||||| || Sbjct 100208 CCTCCTCGAAGACGTAGTACGAGGTGTAGAGTAGACTCTTTCTGAATGTTATAGTCTGAT 100267 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || ||||||||||| || || || | | || || || | ||| Sbjct 100268 AGCGTTCGGCCGTCTTCAAGCTGCTTGCCAGCAAAGATTAACCTTTGCTGATCGGGCGGA 100327 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | ||| | ||||| | |||| | | || ||||| | || || Sbjct 100328 ATACCTTCCTTGT-CTTGAATCTTTGCCTTAACGTTTTCGATTGTATCGCTAGGTTCAAC 100386 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || ||||| || || |||||||| |||||||| |||||||| Sbjct 100387 CTCTAGAGTGATCGTCTTTCCGGTCAGCGTTTTTACGAAGATCTGCAT 100434 Score = 105 bits (116), Expect = 6e-18 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 41639 CCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGG 41698 || || || || | ||| ||||| || ||||| ||||||||||||||||| ||| ||| Sbjct 93219 CCTCGCAGGCGAAGCACAAGATGGAGAGTGCTTTCCTTCTGAATGTTATAATCGTTAAGG 93278 Query 41699 GTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACG 41758 ||||| | || || | ||| || || || || |||| || || ||||| | |||| | Sbjct 93279 GTGCGGCCATCCTCCAACTGTTTTCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATG 93338 Query 41759 CTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTC 41817 | ||| |||||| || | ||||||| || | | |||||| | ||| || || Sbjct 93339 CCCTCTTTGTCC-TGGATCTTTGCTTTGACATTTTCAATTGTGTCGGATGGCTCGACTTC 93397 Query 41818 CACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||| ||||| || || || || ||||| || || |||||||| Sbjct 93398 AAGCGTGATCGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 93442 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 41639 CCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGG 41698 || || ||||| | || || || ||||| || ||||| ||||| ||||| || || Sbjct 92575 CCTCGGAGACGAAGAACGAGGTGGAGCGTTGATTCTTTCTGGATGTTGTAGTCTGACAGT 92634 Query 41699 GTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG-CGGGAAC 41757 || | |||| |||||||| || || || || |||| ||||| ||||| | ||||| Sbjct 92635 GTTCTACCGTCCTCGAGCTGTTTACCCGCAAAGATCAATCGCTGCTGGTCAGGCGGGATA 92694 Query 41758 GCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCT 41816 || ||||||||| ||| |||| || | ||| | | || || | || |||| Sbjct 92695 CCT-TCCTTGTCC-TGAATTTTCGCCTTCACGTTCTCGATGGTATCTGAGGGTTCGACCT 92752 Query 41817 CCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| || || || || ||||||| ||||||||||| || ||||| Sbjct 92753 CCAAGGTAATGGTCTTCCCCGTCAAAGTCTTTACGAAGATTTGCAT 92798 >seq19980 Length=299602 Score = 131 bits (144), Expect = 2e-25 Identities = 171/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 41630 TCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAG 41689 ||| | || || || || | | ||||||||| || || ||| || |||||||| ||| Sbjct 145196 TCATCACCTCCTCGGAGTCTCAGCACCAGATGAAGGGTAGACTCTTTTTGAATGTTGTAG 145137 Query 41690 TCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC 41749 |||||||| ||||| | || |||||||| ||||| ||||| |||| | ||||| || Sbjct 145136 TCGGAGAGCGTGCGACCATCCTCGAGCTGTTTGCCTGCGAAAATCAACCTTTGTTGATCG 145077 Query 41750 GCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGA 41808 | ||||| | ||||||| | ||| |||| |||| |||| | | || ||||| | Sbjct 145076 GGGGGAATTCCTTCCTTGT-CTTGAATTTTGGCTTTAACGTTCTCAATCGTATCGCTTGG 145018 Query 41809 CTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| || || | || |||||||| || || ||||| || || ||||||||||| Sbjct 145017 CTCGACTTCAAGAGTGATCGTTTTTCCGGTAAGCGTTTTAACAAAAATCTGCAT 144964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462185835097600