Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq13163 163 3e-35 seq13245 140 3e-28 seq13242 113 5e-20 >seq13163 Length=1194233 Score = 163 bits (180), Expect = 3e-35 Identities = 168/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || |||||||| || ||||||||||||||||||||| |||| |||||||| | Sbjct 710054 AATGCAGATCTTCGTAAAGACTCTCACGGGCAAAACCATCACCCTCGAAGTCGAAGCTTC 709995 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | | ||||| | |||| ||||| | ||||||||||| || || |||| | Sbjct 709994 CGACACCATAGAAAACG-TGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCTCCGGATC 709936 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| ||| |||||||||||||| |||| | || || |||||| | Sbjct 709935 AGCAGCGTTTAATCTTCGCTGGCAAACAGCTGGAAGACGGCAGAACTCTTTCCGACTATA 709876 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 | ||||| ||||| | ||||| || |||| ||||| Sbjct 709875 ATATCCAAAAGGAATCTACGCTCCACTTAGTTTTGCG 709839 Score = 136 bits (150), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| || || ||||| ||||| || |||||||||||| |||| || ||||| Sbjct 712002 AACATGCAAATCTTTGTGAAAACTCTCACTGGAAAAACCATCACCCTCGAGGTAGAAGCT 711943 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | ||| |||| | || || | || ||||| || || || |||| Sbjct 711942 TCTGACACTATTGAAAATGTCAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCGGAT 711883 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||||| || |||| || ||||| || ||||| |||| | ||||| ||||||| Sbjct 711882 CAGCAACGTCTGATCTTTGCTGGCAAGCAACTGGAAGACGGCAGAACCCTTTCCGACTAC 711823 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||| | ||||| ||||| || |||| Sbjct 711822 AACATCCAGAAGGAATCTACGCTTCATCTGGTCCTGCG 711785 Score = 120 bits (132), Expect = 3e-22 Identities = 142/190 (75%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || |||||||| || || |||||||||||||||||| | || |||||||| | Sbjct 711772 AATGCAGATCTTCGTAAAGACTCTAACGGGCAAAACCATCACCCTGGAAGTCGAAGCTTC 711713 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | ||||| | |||| ||||| | ||||||||||| || ||| |||| | Sbjct 711712 GGACACCATTGAAAACG-TGAAGGCCAAAATCCAGGACAAAGAGGGGATTCCCCCGGATC 711654 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || || | || | ||| ||||| || || || || | | || || ||||||| Sbjct 711653 AACAGCGTTTGATTTTCGCCGGCAAGCAACTCGAAGATGGCAGGACTCTTTCAGACTACA 711594 Query 40868 ACATCCAGAA 40877 |||||||||| Sbjct 711593 ACATCCAGAA 711584 >seq13245 Length=2836997 Score = 140 bits (154), Expect = 3e-28 Identities = 146/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| ||||||||| |||| || || || || Sbjct 675006 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGGCGTCC 675065 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| |||||| || || | ||||| ||||||||||| | || || Sbjct 675066 GATACTATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCA 675124 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| |||||||||||||| || | ||||| ||| ||||||||| Sbjct 675125 GCAGCGGCTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACACTCTCCGACTACAA 675184 Query 40869 CATCCAGAA 40877 ||| ||||| Sbjct 675185 CATACAGAA 675193 >seq13242 Length=2670346 Score = 113 bits (124), Expect = 5e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 116760 TGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTC 116819 |||| || |||||||| |||||| ||||| || |||||||| | ||| | ||| || Sbjct 1009699 TGGCATTCTTCGCCGCTTCCGACGGTATCGTTAATGAGAATCTAATTGAGAGATTCAGTC 1009758 Query 116820 AGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACG 116879 |||||||| | | ||||| || || || ||||||||||| || ||||| || |||||| Sbjct 1009759 AGGAGGTGAAAATCGCCGAAGCACGTTGTTTCTACGGCTTCCAAATCGCGATAGAGAACA 1009818 Query 116880 TGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 | || || ||||||||||| ||||| || || || Sbjct 1009819 TCCATTCTGAAATGTATTCTTTGCTCATTGAAACTTA 1009855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515133815298080