Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq13131 107 2e-18 seq13111 107 2e-18 seq13254 105 8e-18 seq13136 105 8e-18 seq13163 104 3e-17 seq13060 102 9e-17 seq13171 96.9 4e-15 seq13174 82.4 9e-11 >seq13131 Length=480535 Score = 107 bits (118), Expect = 2e-18 Identities = 76/86 (88%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 284136 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 284195 Query 60117 TCACCACTATACTACCGAGGA-TTGA 60141 | ||||||||||||||||||| |||| Sbjct 284196 TGACCACTATACTACCGAGGACTTGA 284221 >seq13111 Length=348602 Score = 107 bits (118), Expect = 2e-18 Identities = 92/111 (83%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 206995 AAAAAAAATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 207054 Query 60117 TCACCACTATACTACCGAGGA-TTGAATATATAACTTG-AATATTACAATC 60165 | |||||||||||| |||||| ||| | || |||||| || |||||| || Sbjct 207055 TGACCACTATACTATCGAGGACTTGGGTTTAAAACTTGAAAAATTACAGTC 207105 >seq13254 Length=3624882 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 2022497 AAAAAAGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 2022556 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 2022557 TGACCACTATACTACCGAGGA 2022577 >seq13136 Length=507102 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 423351 AAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 423292 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 423291 TAACCACTATACTACCGAGGA 423271 >seq13163 Length=1194233 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| ||||| || || | ||||| | |||| || ||||| || |||||||| Sbjct 709863 TCCTTTTGGATATTATAGTCGGAAAGAGTTCTGCCGTCTTCCAGCTGTTTGCCAGCGAAG 709922 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | |||||||| || | || | | ||| |||||| |||||| || | | Sbjct 709923 ATTAAACGCTGCTGATCCGGAGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACGTTT 709982 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| | ||| || |||| ||||||||||||||||| || |||||||| Sbjct 709983 TCTATGGTGTCGGAAGCTTCGACTTCGAGGGTGATGGTTTTGCCCGTGAGAGTCTTTACG 710042 Query 43173 AAGATTTGCATT 43184 ||||| |||||| Sbjct 710043 AAGATCTGCATT 710054 >seq13060 Length=241660 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 227399 AAAAAAATTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 227458 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||| |||||| Sbjct 227459 TAACCACTATACTATCGAGGA 227479 >seq13171 Length=910560 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 405124 AAAAAGAATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 405065 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||| |||||| Sbjct 405064 TAACCACTATACTATCGAGGA 405044 >seq13174 Length=920705 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 60068 CCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATA 60127 || || | ||||||||||||| |||||||| ||||||| |||| ||||| ||||||||| Sbjct 812569 CCCCGACGGGGAATCGAACCCCGGTCTCCCATGTGACAGACGGAGATACTAACCACTATA 812628 Query 60128 CTACCGAGGA 60137 ||| |||||| Sbjct 812629 CTATCGAGGA 812638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571722835528240